repo_status | R Documentation |
It checks the status of the configured or supplied repositories.
repo_status(
platforms = NULL,
r_version = getRversion(),
bioc = NULL,
cran_mirror = NULL
)
repo_ping(
platforms = NULL,
r_version = getRversion(),
bioc = NULL,
cran_mirror = NULL
)
platforms |
Platforms to use, default is the current platform,
plus source packages, via the |
r_version |
R version(s) to use, the default is the current
R version, via |
bioc |
Whether to add the Bioconductor repositories. If you
already configured them via |
cran_mirror |
The CRAN mirror to use. Defaults to the
|
repo_ping()
is similar to repo_status()
but also prints a short
summary of the data, and it returns its result invisibly.
A data frame that has a row for every repository, on every queried platform and R version. It has these columns:
name
: the name of the repository. This comes from the names
of the configured repositories in options("repos")
, or
added by pak. It is typically CRAN
for CRAN, and the
current Bioconductor repositories are BioCsoft
, BioCann
,
BioCexp
, BioCworkflows
.
url
: base URL of the repository.
bioc_version
: Bioconductor version, or NA
for
non-Bioconductor repositories.
username
: Included if at least one repository is authenticated.
NA_character_
for repositories without authentication. See
repo_auth()
.
has_password
: TRUE
is the function could retrieve the password
for the authenticated repository. It is NA
for repositories without
authentication. This column is included only if at least one
repository has authentication. See repo_auth()
.
platform
: platform, possible values are source
, macos
and
windows
currently.
path
: the path to the packages within the base URL, for a
given platform and R version.
r_version
: R version, one of the specified R versions.
ok
: Logical flag, whether the repository contains a metadata
file for the given platform and R version.
ping
: HTTP response time of the repository in seconds. If
the ok
column is FALSE
, then this columns in NA
.
error
: the error object if the HTTP query failed for this
repository, platform and R version.
repo_status()
#> # A data frame: 12 × 10 #> name url type bioc_version platform path r_version ok ping #> <chr> <chr> <chr> <chr> <chr> <chr> <chr> <lgl> <dbl> #> 1 CRAN http… cran NA source src/… 4.4 TRUE 0.246 #> 2 CRAN http… cran NA aarch64… bin/… 4.4 TRUE 0.298 #> 3 BioCso… http… bioc 3.20 source src/… 4.4 TRUE 0.298 #> 4 BioCso… http… bioc 3.20 aarch64… bin/… 4.4 TRUE 0.322 #> 5 BioCann http… bioc 3.20 source src/… 4.4 TRUE 0.530 #> 6 BioCann http… bioc 3.20 aarch64… bin/… 4.4 TRUE 0.643 #> 7 BioCexp http… bioc 3.20 source src/… 4.4 TRUE 0.498 #> 8 BioCexp http… bioc 3.20 aarch64… bin/… 4.4 TRUE 0.707 #> 9 BioCwo… http… bioc 3.20 source src/… 4.4 TRUE 0.569 #> 10 BioCwo… http… bioc 3.20 aarch64… bin/… 4.4 TRUE 0.724 #> 11 BioCbo… http… bioc 3.20 source src/… 4.4 TRUE 0.662 #> 12 BioCbo… http… bioc 3.20 aarch64… bin/… 4.4 TRUE 0.754 #> # ℹ 1 more variable: error <list>
repo_status( platforms = c("windows", "macos"), r_version = c("4.0", "4.1") )
#> # A data frame: 18 × 10 #> name url type bioc_version platform r_version path ok ping #> <chr> <chr> <chr> <chr> <chr> <chr> <chr> <lgl> <dbl> #> 1 CRAN http… cran NA i386+x8… 4.0 bin/… TRUE 0.175 #> 2 CRAN http… cran NA i386+x8… 4.1 bin/… TRUE 0.180 #> 3 CRAN http… cran NA aarch64… 4.1 bin/… FALSE NA #> 4 BioCs… http… bioc 3.12 i386+x8… 4.0 bin/… TRUE 0.539 #> 5 BioCa… http… bioc 3.12 i386+x8… 4.0 bin/… TRUE 0.538 #> 6 BioCe… http… bioc 3.12 i386+x8… 4.0 bin/… TRUE 1.04 #> 7 BioCw… http… bioc 3.12 i386+x8… 4.0 bin/… TRUE 0.809 #> 8 BioCb… http… bioc 3.12 i386+x8… 4.0 bin/… TRUE 0.610 #> 9 BioCs… http… bioc 3.14 i386+x8… 4.1 bin/… TRUE 1.16 #> 10 BioCs… http… bioc 3.14 aarch64… 4.1 bin/… FALSE NA #> 11 BioCa… http… bioc 3.14 i386+x8… 4.1 bin/… TRUE 0.659 #> 12 BioCa… http… bioc 3.14 aarch64… 4.1 bin/… FALSE NA #> 13 BioCe… http… bioc 3.14 i386+x8… 4.1 bin/… TRUE 0.913 #> 14 BioCe… http… bioc 3.14 aarch64… 4.1 bin/… FALSE NA #> 15 BioCw… http… bioc 3.14 i386+x8… 4.1 bin/… TRUE 0.811 #> 16 BioCw… http… bioc 3.14 aarch64… 4.1 bin/… FALSE NA #> 17 BioCb… http… bioc 3.14 i386+x8… 4.1 bin/… TRUE 1.04 #> 18 BioCb… http… bioc 3.14 aarch64… 4.1 bin/… FALSE NA #> # ℹ 1 more variable: error <list>
repo_ping()
#> Repository summary: source aarch64-apple-darwin20 #> CRAN @ cloud.r-project.org ✔ ✔ (63ms ) #> BioCsoft @ bioconductor.org ✔ ✔ (68ms ) #> BioCann @ bioconductor.org ✔ ✔ (153ms) #> BioCexp @ bioconductor.org ✔ ✔ (186ms) #> BioCworkflows @ bioconductor.org ✔ ✔ (112ms) #> BioCbooks @ bioconductor.org ✔ ✔ (193ms)
Other repository functions:
repo_add()
,
repo_get()
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