Description Usage Arguments Value Examples
The Variant Call Format (VCF) specifies the format of a text file used in
bioinformatics for storing gene sequence variations. The format has been developed
with the advent of large-scale genotyping and DNA sequencing projects, such as
the 1000 Genomes Project. The vs_read_vcf()
reads this format and returns
a jobj
object from VCFFeatureSource
scala class.
1 | vs_read_vcf(vsc, path)
|
vsc |
A variantspark connection. |
path |
The file's path. |
spark_jobj, shell_jobj
1 2 3 4 5 6 7 8 9 10 11 12 13 14 |
## Not run:
library(sparklyr)
sc <- spark_connect(master = "local")
vsc <- vs_context(sc)
hipster_vcf <- vs_read_vcf(vsc,
system.file("extdata/hipster.vcf.bz2",
package = "variantspark"))
hipster_vcf
## End(Not run)
|
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