Man pages for rachelwarnock/fbdR
Calculate Birth and Death Rates
| attachment.times | Identify asymmetric attachment ages and extinction times in... |
| bd.probability.extant | Birth-death probability (Stadler, 2012) |
| bd.probability.range | Birth-death probability (Keiding, 1975) |
| boundary.crosser.rates | Calculate speciation and extinction rates using the boundary... |
| boundary.crosser.rates.pa | Calculate speciation and extinction rates using the boundary... |
| est.bd.combined | Maximum likelihood estimation of birth and death rates for a... |
| est.bd.extant | Maximum likelihood estimation of birth and death rates for a... |
| est.bd.ranges | Maximum likelihood estimation of birth and death rates for a... |
| fbd.likelihood.est | Maximum likelihood estimation of birth, death and sampling... |
| fbd.probability | FBD probability |
| fetch.descendants | Fetch descendant lineages in a symmetric tree |
| first.last.appearances | Work out first and last appearances |
| first.last.appearances.pa | Work out first and last appearance intervals |
| gap.filler.rates | Calculate speciation and extinction rates using the... |
| interval.types.3t | Categorise per interval taxon types using the three-timer... |
| interval.types.bc | Categorise per interval taxon types using boundary crosser... |
| interval.types.bc.pa | Categorise per interval taxon types using boundary crosser... |
| interval.types.gf | Categorise per interval taxon types using the gap-filler... |
| presence.absence.matrix | Generate presence/absence matrix from simulated data |
| presence.absence.precooked | Precooked presence absence matrix |
| stages | Geological stages |
| three.timer.rates | Calculate speciation and extinction rates using the... |
| uncorrected.rates | Calculate speciation and extinction rates using the... |
