| Compute.Pairwise.SpeciesTree.Distances | Compute.Pairwise.SpeciesTree.Distances: function to compute a... | 
| Compute.Probabilistic.SpeciesTree.Distances | Compute.Probabilistic.SpeciesTree.Distances: function to... | 
| ComputePSTD | ComputeDistancesPSTD | 
| Pipeline.SpeciesNetworkDistances.ScaleAllBranches | Pipeline.SpeciesNetworkDistances.ScaleAllBranches: function... | 
| Pipeline.SpeciesTreeDistances.ScaleAllBranches | Pipeline.SpeciesTreeDistances.ScaleAllBranches: function to... | 
| Pipeline.SpeciesTreeDistances.ScaleSingleBranch | Pipeline.SpeciesTreeDistances.ScaleSingleBranch: function to... | 
| Read.GeneTree.Probabilities | Read.GeneTree.Probabilities: function to extract the gene... | 
| RunHybridCoal | RunHybridCoal: function to run HYBRID-COAL on a given species... | 
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