Conduct.KH_3: Conduct.KH_3: function to conduct the KH_2 STAR test given...

In radamsRHA/SpeciesTopoTestR: Likelihood-based tests of species topologies in R

Conduct.KH_3: function to conduct the KH_2 STAR test given two distinct species topologies and a set of input gene trees

Description

This function returns a list containing p-values of the KH_2 STAR test for two input species tree topologies

Usage

Conduct.KH_3(
  handle.SpeciesTree1,
  handle.SpeciesTree2,
  handle.InputGeneTrees,
  numeric.NumberOfReps,
  string.PathDir
)

Arguments

handle.SpeciesTree1	Phylogenetic tree defining the first species topology
handle.SpeciesTree2	Phylogenetic tree defining the second species topology
numeric.NumberOfReps	Number of bootstrap replicates to analyze
string.PathDir	String defining the path to a parent directory used for conduct KH_1 STAR test
handle.GeneTrees	Phylo object containing a list of the input gene trees

Value

List Returns a list containing (1) twosided pvalue, (2) upper p-values, (3) lower p-values, and (4) a vector of the bootstrapped test statistics delta

radamsRHA/SpeciesTopoTestR documentation built on Sept. 5, 2022, 7:37 p.m.