Files in rafalab/smallcount
Methods for Small Counts Stored in a Sparse Matrix
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/RcppExports.R
R/classes.R
R/data.R
R/group_rates.R
R/poisson_deviance.R
R/poisson_dispersion.R
R/poisson_pca.R
R/read_sparse_matrix.R
R/transforms.R
R/utils.R
README.md
data/tenx_subset.rda
inst/extdata/tenx_subset.csv.gz
inst/extdata/tenx_subset.mtx.gz
inst/script/make-small-example.R
man/CountTransform-class.Rd
man/CountTransform.Rd
man/TransformedMatrix-class.Rd
man/TransformedMatrix.Rd
man/cpm_log1p_transform.Rd
man/dot-calculateMu.Rd
man/dot-colsumsWithDefault.Rd
man/dot-computePca.Rd
man/dot-convertToSparse.Rd
man/dot-nzcols.Rd
man/dot-nzrows.Rd
man/dot-poissonDevianceResidualsPca.Rd
man/dot-poissonPearsonResidualsPca.Rd
man/dot-rawResidualsPca.Rd
man/dot-rowRatesWithDefault.Rd
man/groupRates.Rd
man/identity_transform.Rd
man/log1p_transform.Rd
man/poissonDeviance.Rd
man/poissonDispersion.Rd
man/poissonPca.Rd
man/readSparseMatrix.Rd
man/scaled_log1p_transform.Rd
man/tenx_subset.Rd
man/unzip_file.Rd
man/validate_sample.Rd
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/csv_file_reader.cpp
src/csv_file_reader.h
src/exports.cpp
src/file_reader.cpp
src/file_reader.h
src/hdf5_file_reader.cpp
src/hdf5_file_reader.h
src/mtx_file_reader.cpp
src/mtx_file_reader.h
src/sparse_matrix.cpp
src/sparse_matrix.h
src/svt_apply.cpp
src/svt_apply.h
src/tenx_file_params.h
tests/testthat.R
tests/testthat/test-poisson_pca.R
tests/testthat/test-read_sparse_matrix.R
tests/testthat/test-stat_summaries.R
tests/testthat/test-transforms.R
tests/testthat/testdata/generate_test_data.py
tests/testthat/testdata/small_dense_square.tar.gz
tests/testthat/testdata/small_dense_square_v2.h5
tests/testthat/testdata/small_dense_square_v2/prefix_barcodes.tsv
tests/testthat/testdata/small_dense_square_v2/prefix_genes.tsv
tests/testthat/testdata/small_dense_square_v2/prefix_matrix.mtx
tests/testthat/testdata/small_dense_square_v3.h5
tests/testthat/testdata/small_dense_square_v3.tbz2
