R/data.R

In rahuldhodapkar/crules: Association Rule Learning Toolkit for Single Cells

# data.R
#     Copyright (C) 2021  Rahul Dhodapkar
#
#     This program is free software: you can redistribute it and/or modify
#     it under the terms of the GNU Affero General Public License as
#     published by the Free Software Foundation, either version 3 of the
#     License, or (at your option) any later version.
#
#     This program is distributed in the hope that it will be useful,
#     but WITHOUT ANY WARRANTY; without even the implied warranty of
#     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
#     GNU Affero General Public License for more details.
#
#     You should have received a copy of the GNU Affero General Public License
#     along with this program.  If not, see <https://www.gnu.org/licenses/>.

# Single-cell RNA sequencing data for monocytes from peripheral blood
# NOTE: NOT exported, and therefore not formally documented
#
# A Seurat 4.0.0 object containing pre-processed CD16+ and CD14+ monocytes
# for further evaluation with the crules framework.
#
# @format A Seurat object named "monocytes" containing two populations: "CD14+ Mono" and "FCGR3A+ Mono"
#
# @source \url{https://satijalab.org/seurat/articles/pbmc3k_tutorial.html}
# "monocytes"


# Single-cell RNA sequencing data for all cells from peripheral blood
# NOTE: NOT exported, and therefore not formally documented
#
# A Seurat 4.0.0 object containing pre-processed pbmcs for further evaluation
# within the crules framework
#
# @format A Seurat object named "monocytes" containing two populations: "CD14+ Mono" and "FCGR3A+ Mono"
#
# @source \url{https://satijalab.org/seurat/articles/pbmc3k_tutorial.html}
# "pbmc"