TestData: TestData: A PET cluster file to test MICC model

In rakarnik/MICC: Model based Interaction Calling from ChIA-PET data

Description

This data is a standard input PET cluster file for MICC model

Usage

data(TestData)

Format

A data frame with 5613 observations on the following 9 variables.

chr.

Chromosome label with levels chr1 chr10 chr11 chr12 chr13 chr14 chr15 chr16 chr17 chr18 chr19 chr2 chr20 chr21 chr22 chr3 chr4 chr5 chr6 chr7 chr8 chr9 chrX chrY

start

Starting position of left anchor regions

end

Ending position of left anchor regions

chr.

Chromosome label with levels chr1 chr10 chr11 chr12 chr13 chr14 chr15 chr16 chr17 chr18 chr19 chr2 chr20 chr21 chr22 chr3 chr4 chr5 chr6 chr7 chr8 chr9 chrX chrY

start

Starting position of right anchor regions

end

Ending position of right anchor regions

cAB

PET-count between two anchor regions

cA

Total PET-count in the left anchor region

cB

Total PET-count in the right anchor region

Examples

data(TestData)

rakarnik/MICC documentation built on May 31, 2019, 10:36 a.m.