ciplot_by: ciplot_by

In raredd/cmprsk2: cmprsk2

ciplot_by

Description

This function helps create stratified ciplots quickly with panel labels and Gray's tests for each plot.

Usage

ciplot_by(
  rhs = "1",
  event,
  data,
  by = NULL,
  single = TRUE,
  cencode = NULL,
  gy_test = TRUE,
  main = NULL,
  ylab = NULL,
  sub = NULL,
  groups_lab = NULL,
  fig_lab = NULL,
  col.ci = NULL,
  map.col = FALSE,
  time = NULL,
  add = FALSE,
  plot = TRUE,
  ...
)

Arguments

rhs	the right-hand side of the formula
event	character string indicating the event; see details
data	data frame to use
by	optional character string of stratification variable
single	logical; if TRUE, each level of by will be drawn in a separate window
cencode	unique value of event denoting censoring
gy_test	one of FALSE (no test performed), a numeric value (passed to cuminc as the rho value), or TRUE (default, rho = 0)
main	title(s) of plot(s)
ylab	y-axis label
sub	sub-title displayed in upper left corner; should be a character vector with length equal to the number of panels (i.e., the number of unique values of by or length one if by was not given)
groups_lab	events table group labels; should be a character vector with length equal to the number of groups
fig_lab	figure panel labels; should be a character vector with length equal to the number of panels (i.e., the number of unique values of by or length one if by was not given)
col.ci	color for individual curves or for all curves in a plot if by is given and map.col = TRUE; if col.ci is a named vector which matches the group labels, then colors are mapped to the corresponding groups; see ciplot
map.col	logical; if TRUE, col.ci will be the color of all curves in each plot (only used when by is non-missing)
time	character string of the time variable (optional)
add	logical; if FALSE (default), resets graphical parameters to settings before ciplot_by was called; set to TRUE for adding to existing plots
plot	logical; if FALSE, no plot is created but a list with cuminc2 object(s) is returned
...	additional arguments passed to ciplot or graphical parameters subsequently passed to par

Value

Invisibly returns a list of cuminc2 object(s) used to generate plot(s). If by was used, there will be a list element for each unique value.

See Also

ciplot; cuminc2; cuminc

Examples

## basic usage: Surv(time, event) ~ 1
ciplot_by(time = 'futime', event = 'event', data = transplant)

## with groups: Surv(time, event) ~ group
ciplot_by('sex', time = 'futime', event = 'event',
          data = transplant)

ciplot_by('sex', time = 'futime', event = 'event',
          data = transplant, by = 'abo', single = FALSE)

par(mfrow = c(1, 2))
ciplot_by('sex', time = 'futime', event = 'event',
          data = transplant, by = 'sex', xlim = c(0, 1500),
          single = FALSE, events.total = 2100)

raredd/cmprsk2 documentation built on March 29, 2024, 5:34 a.m.