meth.plot: Methylation plot

In raulsanzr/methtools: Methylation Tools

Methylation plot

Description

Represents the methylation values for all the samples and the detected DMRs present in a defined region of the genome.

Usage

meth.plot(genome, chr, start, end, sites, regions, enhancers, group)

Arguments

genome	Reference genome. Available genomes: hg19, hg38 and mm39.
chr	Chromosome.
start	First position (included).
end	Last position (included).
sites	GRanges object containing the CpG sites and its methylation values associated.
regions	GRanges object or data.frame containing the detected DMRs.
enhancers	data.frame containing the location of enhancers (optional).
group	Feature to group the samples (optional).

Examples

genome <- "hg19"
chr <- "chr7"
start <- 14111939
end <- 15071940
group <- c("control", "cond_A", "cond_A", "cond_B", "control", "cond_A", ...)

raulsanzr/methtools documentation built on June 30, 2022, 5:58 p.m.