plot_alphaDiversity_rapidGrowth_tttest_boxplots: Create boxplots of diversity indices by rapid growth status.

In rbarner/rapidInfantGrowthMB: Determines Association Between Infant Microbiome At 1 Month And Rapid Growth Status From Birth To 12 months

Description

Create boxplots of diversity indices by rapid growth status. The title of the box plot will include the t-statistic and a p-value generated by a t-test to determine differences in diversity indices by rapid growth status.

Usage

plot_alphaDiversity_rapidGrowth_ttest_boxplots(variable = "shannonDiversity",variableName = "Shannon Diversity")

Arguments

variable	Diversity index to be plotted. Default is "shannonDiversity". Other options are strictly: "richness","evenness" and "numSeqPerSample"
variableName	Name of diversity index to be plotted. Default is "Shannon Diversity". Other options suggested options are: "Richness","Evenness" and "Number Sequences /Sample". These names should be related to the "variable" being plotted.

Value

None

Author(s)

Roshonda Barner Jones

Examples

 plot_alphaDiversity_rapidGrowth_ttest_boxplots()
 plot_alphaDiversity_rapidGrowth_ttest_boxplots(variable = "shannonDiversity",variableName = "Shannon Diversity")
 plot_alphaDiversity_rapidGrowth_ttest_boxplots(variable = "srichness",variableName = "Richness")

rbarner/rapidInfantGrowthMB documentation built on Sept. 30, 2020, 12:05 a.m.