prep.for.rng: Prepare coverage-GC binning data for calculation of relative...
In rbhwilliams/newblerCG: Making use of the Newbler 454ContigGraph file
Description
Usage
Arguments
Value
Description
take a 3-column (cov,len,gc) data.frame (bDf), subset by contig length (minl) and return a matrix of log10(cov) and gc data for use in make.rng.from.2d.binning.space
Usage
1
prep.for.rng(bDf,minl)
Arguments
bDf
is a data.frame containing columns named coverage (cov), length (len) and GC (gc)
minl
is a integer, being the inclusion threshold for minimum contig length
Value
A matrix containing two columns: lgcov (log10 coverage from bDf$cov) and gc (cov$gc). Rows index contigs, filtered for length via minl
rbhwilliams/newblerCG documentation built on May 27, 2019, 3 a.m.
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Description Usage Arguments Value
Description
take a 3-column (cov,len,gc) data.frame (bDf), subset by contig length (minl) and return a matrix of log10(cov) and gc data for use in make.rng.from.2d.binning.space
Usage
1 | prep.for.rng(bDf,minl)
|
Arguments
bDf |
is a data.frame containing columns named coverage (cov), length (len) and GC (gc) |
minl |
is a integer, being the inclusion threshold for minimum contig length |
Value
A matrix containing two columns: lgcov (log10 coverage from bDf$cov) and gc (cov$gc). Rows index contigs, filtered for length via minl
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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