Description Usage Arguments Value
take a 3-column (cov,len,gc) data.frame (bDf
), subset by contig length (minl
) and return a matrix of log10(cov) and gc data for use in make.rng.from.2d.binning.space
1 | prep.for.rng(bDf,minl)
|
bDf |
is a data.frame containing columns named coverage (cov), length (len) and GC (gc) |
minl |
is a integer, being the inclusion threshold for minimum contig length |
A matrix containing two columns: lgcov (log10 coverage from bDf$cov
) and gc (cov$gc
). Rows index contigs, filtered for length via minl
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