read.tax: Read in a .tax output file from LCAMapper
In rbhwilliams/orf.lcam: Processing taxonomic and functional data from lcamapper
Description
Usage
Arguments
Value
Examples
Description
Import taxonomic assignments from an ORF-level homology search analysis processed by lcamapper.sh
Usage
1
Arguments
file
is a file with name *-tax.file output from lcamapper.sh
Value
A character vector containing ORF data and post-LCA annotations. Each element contains results from one ORF.
Examples
1
## Not run: a<-read.tax("UM-32-0_ORF-tax.txt")
rbhwilliams/orf.lcam documentation built on May 27, 2019, 3 a.m.
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Description Usage Arguments Value Examples
Description
Import taxonomic assignments from an ORF-level homology search analysis processed by lcamapper.sh
Usage
1 |
Arguments
file |
is a file with name *-tax.file output from lcamapper.sh |
Value
A character vector containing ORF data and post-LCA annotations. Each element contains results from one ORF.
Examples
1 | ## Not run: a<-read.tax("UM-32-0_ORF-tax.txt")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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