Files in rcannood/GillespieSSA2
Gillespie's Stochastic Simulation Algorithm for Impatient People

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
GillespieSSA2.Rproj
NAMESPACE
NEWS.md R/RcppExports.R R/compile_reactions.R R/ode_em.R R/package.R R/port_reactions.R R/reaction.R R/ssa_btl.R R/ssa_etl.R R/ssa_exact.R R/ssa_method.R R/ssa_plot.R R/ssa_simulation.R R/zzz.R README.Rmd README.md
appveyor.yml
cran-comments.md man/GillespieSSA2.Rd man/autoplot.ssa.Rd man/compile_reactions.Rd
man/figures/dependencies.png
man/ode_em.Rd man/port_reactions.Rd man/print_ssa.Rd man/reaction.Rd man/ssa.Rd man/ssa_btl.Rd man/ssa_etl.Rd man/ssa_exact.Rd
src/RcppExports.cpp
src/ode_em.cpp
src/ssa_btl.cpp
src/ssa_etl.cpp
src/ssa_exact.cpp
src/ssa_method.cpp
src/ssa_method.h
src/ssa_simulation.cpp
src/test_helper_funs.cpp
src/utils.cpp
src/utils.h
tests/testthat.R tests/testthat/helper-test_propensity.R tests/testthat/helper-test_ssa_step.R tests/testthat/test-compile_reactions.R tests/testthat/test-ode_em.R tests/testthat/test-reaction.R tests/testthat/test-ssa.R tests/testthat/test-ssa_btl.R tests/testthat/test-ssa_etl.R tests/testthat/test-ssa_exact.R
vignettes/.gitignore
vignettes/an_introduction.Rmd vignettes/an_introduction.md
vignettes/an_introduction_files/figure-gfm/unnamed-chunk-5-1.png
vignettes/converting_from_GillespieSSA.Rmd vignettes/converting_from_GillespieSSA.md
vignettes/converting_from_GillespieSSA_files/figure-gfm/gssa1-1.png
vignettes/converting_from_GillespieSSA_files/figure-gfm/gssa2-1.png
vignettes/converting_from_GillespieSSA_files/figure-gfm/port-1.png
vignettes/decaying_dimer.Rmd vignettes/decaying_dimer.md
vignettes/decaying_dimer_files/figure-gfm/btl-1.png
vignettes/decaying_dimer_files/figure-gfm/etl-1.png
vignettes/decaying_dimer_files/figure-gfm/exact-1.png
vignettes/epi_chain.Rmd vignettes/epi_chain.md
vignettes/epi_chain_files/figure-gfm/btl-1.png
vignettes/epi_chain_files/figure-gfm/etl-1.png
vignettes/epi_chain_files/figure-gfm/exact-1.png
vignettes/linear_chain.Rmd vignettes/linear_chain.md
vignettes/linear_chain_files/figure-gfm/btl-1.png
vignettes/linear_chain_files/figure-gfm/etl-1.png
vignettes/linear_chain_files/figure-gfm/exact-1.png
vignettes/logistic_growth.Rmd vignettes/logistic_growth.md
vignettes/logistic_growth_files/figure-gfm/btl-1.png
vignettes/logistic_growth_files/figure-gfm/etl-1.png
vignettes/logistic_growth_files/figure-gfm/exact-1.png
vignettes/lotka_predator_prey.Rmd vignettes/lotka_predator_prey.md
vignettes/lotka_predator_prey_files/figure-gfm/btl-1.png
vignettes/lotka_predator_prey_files/figure-gfm/etl-1.png
vignettes/lotka_predator_prey_files/figure-gfm/exact-1.png
vignettes/radioactive_decay.Rmd vignettes/radioactive_decay.md
vignettes/radioactive_decay_files/figure-gfm/btl-1.png
vignettes/radioactive_decay_files/figure-gfm/etl-1.png
vignettes/radioactive_decay_files/figure-gfm/exact-1.png
vignettes/rm_predator_prey.Rmd vignettes/rm_predator_prey.md
vignettes/rm_predator_prey_files/figure-gfm/btl-1.png
vignettes/rm_predator_prey_files/figure-gfm/etl-1.png
vignettes/rm_predator_prey_files/figure-gfm/exact-1.png
vignettes/sir.Rmd vignettes/sir.md
vignettes/sir_files/figure-gfm/btl-1.png
vignettes/sir_files/figure-gfm/etl-1.png
vignettes/sir_files/figure-gfm/exact-1.png
rcannood/GillespieSSA2 documentation built on Nov. 5, 2019, 3:02 a.m.