Files in rcannood/gillespie

Gillespie's Stochastic Simulation Algorithm for Impatient People

.Rbuildignore

.github/.gitignore

.github/workflows/R-CMD-check.yaml

.github/workflows/pkgdown.yaml

.github/workflows/test-coverage.yaml

.gitignore

DESCRIPTION

GillespieSSA2.Rproj

NAMESPACE

NEWS.md R/RcppExports.R R/compile_reactions.R R/ode_em.R R/package.R R/port_reactions.R R/reaction.R R/ssa_btl.R R/ssa_etl.R R/ssa_exact.R R/ssa_method.R R/ssa_plot.R R/ssa_simulation.R R/zzz.R README.Rmd README.md

_pkgdown.yml

codecov.yml

cran-comments.md

docker/Dockerfile

docker/README.md

inst/CITATION

inst/REFERENCES.bib

man/GillespieSSA2.Rd man/compile_reactions.Rd

man/figures/dependencies.png

man/ode_em.Rd man/plot_ssa.Rd man/port_reactions.Rd man/print_ssa.Rd man/reaction.Rd man/ssa.Rd man/ssa_btl.Rd man/ssa_etl.Rd man/ssa_exact.Rd revdep/README.md revdep/cran.md

revdep/data.sqlite

revdep/failures.md revdep/problems.md

src/RcppExports.cpp

src/ode_em.cpp

src/ssa_btl.cpp

src/ssa_etl.cpp

src/ssa_exact.cpp

src/ssa_method.cpp

src/ssa_method.h

src/ssa_simulation.cpp

src/test_helper_funs.cpp

src/utils.cpp

src/utils.h

tests/testthat.R tests/testthat/helper-test_propensity.R tests/testthat/helper-test_ssa_step.R tests/testthat/test-compile_reactions.R tests/testthat/test-ode_em.R tests/testthat/test-reaction.R tests/testthat/test-ssa.R tests/testthat/test-ssa_btl.R tests/testthat/test-ssa_etl.R tests/testthat/test-ssa_exact.R

vignettes/.gitignore

vignettes/an_introduction.Rmd vignettes/an_introduction.md

vignettes/an_introduction_files/figure-gfm/unnamed-chunk-5-1.png

vignettes/converting_from_GillespieSSA.Rmd vignettes/converting_from_GillespieSSA.md

vignettes/converting_from_GillespieSSA_files/figure-gfm/gssa1-1.png

vignettes/converting_from_GillespieSSA_files/figure-gfm/gssa2-1.png

vignettes/converting_from_GillespieSSA_files/figure-gfm/port-1.png

vignettes/decaying_dimer.Rmd vignettes/decaying_dimer.md

vignettes/decaying_dimer_files/figure-gfm/btl-1.png

vignettes/decaying_dimer_files/figure-gfm/etl-1.png

vignettes/decaying_dimer_files/figure-gfm/exact-1.png

vignettes/epi_chain.Rmd vignettes/epi_chain.md

vignettes/epi_chain_files/figure-gfm/btl-1.png

vignettes/epi_chain_files/figure-gfm/etl-1.png

vignettes/epi_chain_files/figure-gfm/exact-1.png

vignettes/linear_chain.Rmd vignettes/linear_chain.md

vignettes/linear_chain_files/figure-gfm/btl-1.png

vignettes/linear_chain_files/figure-gfm/etl-1.png

vignettes/linear_chain_files/figure-gfm/exact-1.png

vignettes/logistic_growth.Rmd vignettes/logistic_growth.md

vignettes/logistic_growth_files/figure-gfm/btl-1.png

vignettes/logistic_growth_files/figure-gfm/etl-1.png

vignettes/logistic_growth_files/figure-gfm/exact-1.png

vignettes/lotka_predator_prey.Rmd vignettes/lotka_predator_prey.md

vignettes/lotka_predator_prey_files/figure-gfm/btl-1.png

vignettes/lotka_predator_prey_files/figure-gfm/etl-1.png

vignettes/lotka_predator_prey_files/figure-gfm/exact-1.png

vignettes/radioactive_decay.Rmd vignettes/radioactive_decay.md

vignettes/radioactive_decay_files/figure-gfm/btl-1.png

vignettes/radioactive_decay_files/figure-gfm/etl-1.png

vignettes/radioactive_decay_files/figure-gfm/exact-1.png

vignettes/rm_predator_prey.Rmd vignettes/rm_predator_prey.md

vignettes/rm_predator_prey_files/figure-gfm/btl-1.png

vignettes/rm_predator_prey_files/figure-gfm/etl-1.png

vignettes/rm_predator_prey_files/figure-gfm/exact-1.png

vignettes/sir.Rmd vignettes/sir.md

vignettes/sir_files/figure-gfm/btl-1.png

vignettes/sir_files/figure-gfm/etl-1.png

vignettes/sir_files/figure-gfm/exact-1.png

rcannood/gillespie documentation built on Jan. 26, 2023, 8:37 p.m.