Man pages for rcastelo/qpgraph
Estimation of genetic and molecular regulatory networks from high-throughput genomics data
| EcoliOxygen | Preprocessed microarray oxygen deprivation data and filtered... |
| eQTLcross-class | eQTL experimental cross model class |
| eQTLnetwork-class | eQTL network model class |
| eQTLnetworkEstimate | Estimation of a eQTL network from genetical genomics data |
| eQTLnetworkEstimationParam-class | eQTL network parameter model class |
| filterCollinearities | Filter collinearities |
| graphParam-class | Graph parameter classes |
| HMgmm-class | Homogeneous mixed graphical Markov model |
| qpAllCItests | Tests of conditional independence |
| qpAnyGraph | A graph |
| qpAvgNrr | Average non-rejection rate estimation |
| qpBoundary | Maximum boundary size of the resulting qp-graphs |
| qpCItest | Conditional independence test |
| qpClique | Complexity of the resulting qp-graphs |
| qpCliqueNumber | Clique number |
| qpCov | Calculation of the sample covariance matrix |
| qpEdgeNrr | Non-rejection rate estimation for a pair of variables |
| qpFunctionalCoherence | Functional coherence estimation |
| qpG2Sigma | Random covariance matrix |
| qpGenNrr | Generalized non-rejection rate estimation |
| qpGetCliques | Clique list |
| qpGraph-class | The qp-graph |
| qpGraphDensity | Densities of resulting qp-graphs |
| qpgraph-package | Estimation of genetic and molecular regulatory networks from... |
| qpHist | Histograms of non-rejection rates |
| qpHTF | Hastie Tibshirani Friedman iterative regression algorithm |
| qpImportNrr | Import non-rejection rates |
| qpIPF | Iterative proportional fitting algorithm |
| qpK2ParCor | Partial correlation coefficients |
| qpNrr | Non-rejection rate estimation |
| qpPAC | Estimation of partial correlation coefficients |
| qpPathWeight | Calculation of path weights |
| qpPCC | Estimation of Pearson correlation coefficients |
| qpPlotMap | Plots a map of associated pairs |
| qpPlotNetwork | Plots a graph |
| qpPrecisionRecall | Calculation of precision-recall curves |
| qpPRscoreThreshold | Calculation of scores thresholds attaining nominal precision... |
| qpRndGraph | Undirected random d-regular graphs |
| qpRndWishart | Random Wishart distribution |
| qpTopPairs | Report pairs of variables |
| qpUnifRndAssociation | Uniformly random association values |
| qpUpdateCliquesRemoving | Update clique list when removing one edge |
| SsdMatrix-class | Sum of squares and deviations Matrices |
| UGgmm-class | Undirected Gaussian graphical Markov model |
