Man pages for rdinnager/nichefillr
Niche Filling Simulations in R
| continue_sim_radiation | Continue Niche Filling Simulation Function |
| example_parms | Function to generate example parameter objects. |
| expandingList | Utility function for creating and adding to a list that... |
| extract_final_SR | Extract Final Species Richness of Simulation |
| extract_params | Extract Useful Parameters of Simulation Object |
| gen_dirichlet | Generate Dirichlet Distribution Parameters for Peaks |
| generate_landscape | Generate a Random Carrying Capacity Landscape |
| generate_landscape_old | Generate Random Carrying Capacity Landscape |
| generate_random_params_QMC | Generate Quasi Monte Carlo Random Parameters for Simulation |
| integrate_fun | Numerically Integrate Carrying Capacity Landscape |
| K_func | Carrying Capacity Landscape Function (R version) |
| make_df_from_sim | Function to extract trait history from simulation object as a... |
| make_ode_df | Convert ODE Output into a Data.frame |
| make_sim_df | Extract Data.frame of Simulation Data |
| make_tree_ob | Initialize Tree Object for Macroevolution Simulation |
| plot.nichfillr_sim | Plot a 'nichefillr_sim' object. If the simulation object... |
| sim_animation | Function to animate the results of a simulation. Currently... |
| sim_radiation | Main Niche Filling Simulation Function |
| sim_radiation_multi | Function that takes a list of parameter objects and runs them... |
| trait_pop_sim_de | Calculate Niche Filling Trait and Population Simulation... |
| update_br_lens | Function to Update Branch-lengths (and Traits) in... |
| update_tree_ob_extinction | Update Simulation Object with Extinction Event |
| update_tree_ob_speciate | Update Simulation Object with Speciation Event |
| vis_K_landscape | Visualize a Carrying Capacity Landscape using RGL |
