Man pages for reedssorenson/RNAdecay
Maximum Likelihood Decay Modeling of RNA Degradation Data
| a_high | calculates bounds for modeled parameters |
| aic | Akaike information criterion (with correction) |
| cols | Indexes column names of a data.frame matching multiple... |
| comb_cv | combined adjusted coefficient of variation |
| const_decay | exponential decay functions |
| constraint_fun_list_maker | contraint function list maker |
| decay_data | Normalized RNA abundance RNA decay timecourse |
| decay_plot | decay_plot() function |
| fit_var | sigma^2 estimation |
| groupings | Combinatorial groups matrix generator |
| group_map | model color map |
| hl_plot | hl_plot() function |
| log_lik | log likelihood |
| models | Example double exponential decay modeling results |
| mod_optimization | model optimization for fitting exponential decay models to... |
| n_par | number of Parameters function |
| plain_theme | a custom ggplot2 theme |
| results | Example double exponential decay modeling results |
| RPMs | RNA abundance reads per million over RNA decay timecourse |
| sse_null_decaying_decay | sum of the squared errors for null models |
