generateChromosomeGeneSet: Topological gene sets

In reef103/genomicInstability: Genomic Instability estimation for scRNA-Seq

Topological gene sets

Description

This function generates a list of sets of k genes encoded by neighbor loci

Usage

generateChromosomeGeneSet(species = c("human", "mouse"), k = 100, skip = 25)

Arguments

species	Character string indicating the species, either human or mouse
k	Integer indicating the number of genes per set
skip	Interger indicating the displacement of the window for selecting the k genes

Value

List of topoligically-close gene sets

Examples

chrom_set <- generateChromosomeGeneSet('human')
length(chrom_set)
chrom_set[seq_len(2)]

reef103/genomicInstability documentation built on Oct. 10, 2022, 12:33 a.m.