API for reichlab/2018-2019-cdc-flu-contest
Code for Reich Lab entries in CDC flu contest 2018-2019
| Global functions | |
|---|---|
| assemble_predictions | Man page |
| assemble_stacking_inputs | Man page |
| calc_median_from_binned_probs | Man page |
| cdcFlu20182019 | Man page |
| cdcFlu20182019-package | Man page |
| compute_competition_log_score | Man page |
| download_and_preprocess_flu_data | Man page |
| download_and_preprocess_state_flu_data | Man page |
| fit_kde_log_peak_week_inc | Man page |
| fit_kde_onset_week | Man page |
| fit_kde_peak_week | Man page |
| fit_kde_weekly_inc | Man page |
| fit_kernel_smoothed_stacked_model_fixed_bw | Man page |
| fit_region_kdes | Man page |
| fit_region_sarima | Man page |
| fit_stacked_model | Man page |
| fit_unregularized_stacked_model | Man page |
| flu_data | Man page |
| flu_onset_baselines | Man page |
| get_inc_bin | Man page |
| get_initial_rng_substream | Man page |
| get_log_scores_via_direct_simulation | Man page |
| get_log_scores_via_trajectory_simulation | Man page |
| get_num_MMWR_weeks_in_first_season_year | Man page |
| get_num_MMWR_weeks_in_year | Man page |
| get_observed_seasonal_quantities | Man page |
| get_official_observed_seasonal_quantities | Man page |
| get_onset_baseline | Man page |
| get_onset_week | Man page |
| get_partially_revised_ilinet | Man page |
| get_rng_substream | Man page |
| get_submission_one_region_via_trajectory_simulation | Man page |
| get_submission_via_trajectory_simulation | Man page |
| logspace_add | Man page |
| logspace_sub | Man page |
| logspace_sub_matrix_rows | Man page |
| logspace_sum | Man page |
| logspace_sum_matrix_rows | Man page |
| make_one_kde_prediction_file | Man page |
| make_predictions_dataframe | Man page |
| make_predictions_plots | Man page |
| my_plot_weekahead | Man page |
| predict_kde_log_peak_week_inc | Man page |
| predict_kde_log_weekly_inc | Man page |
| predict_kde_onset_week | Man page |
| predict_kde_peak_week | Man page |
| predict_region_kde | Man page |
| sample_predictive_trajectories_arima_wrapper | Man page |
| season_week_to_year_week | Man page |
| simulate_trajectories_kcde | Man page |
| state_flu_data | Man page |
| weighted_combine_predictions | Man page |
| year_week_to_season_week | Man page |
