Files in reichlab/adaptively-weighted-ensemble
Adaptively Weighted Ensembles via Stacking

.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/awes-package.R R/data.R R/kcde-utils.R R/kde-prediction-utils.R R/kde-utils.R R/sarima-utils.R R/stacking-utils.R R/utils.R README.md
data-raw/allflu-cleaned.csv
data-raw/cdc-baselines.csv
data/flu_data.rdata
data/flu_onset_baselines.rdata
inst/AWE-workflow.Rmd inst/data-processing/create-clean-flu-data.R inst/data-processing/create-flu-baseline-file.R inst/estimation/em-stacking/em-stacking-estimation.R inst/estimation/em-stacking/em-stacking-plots.R
inst/estimation/em-stacking/fits/em_weights.rds
inst/estimation/em-stacking/plots/em-stacking-plots-all-regions-all-targets.pdf inst/estimation/kcde/check-kcde-predictions-onset.pdf inst/estimation/kcde/check-kcde-predictions-peak_inc.pdf inst/estimation/kcde/check-kcde-predictions-peak_week.pdf inst/estimation/kcde/check-kcde-predictions-ph_1_inc.pdf inst/estimation/kcde/check-kcde-predictions-ph_2_inc.pdf inst/estimation/kcde/check-kcde-predictions-ph_3_inc.pdf inst/estimation/kcde/check-kcde-predictions-ph_4_inc.pdf inst/estimation/kcde/check-kcde-predictions.pdf inst/estimation/kcde/check-loso-predictions.R inst/estimation/kcde/check_dists_sum_to_1.R inst/estimation/kcde/copula-estimation-step-none-left-out.R inst/estimation/kcde/copula-estimation-step.R
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 1-max_lag_1-seasonality_TRUE-season_left_out_1997-1998.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 1-max_lag_1-seasonality_TRUE-season_left_out_1998-1999.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 1-max_lag_1-seasonality_TRUE-season_left_out_1999-2000.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 1-max_lag_1-seasonality_TRUE-season_left_out_2000-2001.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 1-max_lag_1-seasonality_TRUE-season_left_out_2001-2002.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 1-max_lag_1-seasonality_TRUE-season_left_out_2002-2003.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 1-max_lag_1-seasonality_TRUE-season_left_out_2003-2004.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 1-max_lag_1-seasonality_TRUE-season_left_out_2004-2005.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 1-max_lag_1-seasonality_TRUE-season_left_out_2005-2006.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 1-max_lag_1-seasonality_TRUE-season_left_out_2006-2007.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 1-max_lag_1-seasonality_TRUE-season_left_out_2007-2008.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 1-max_lag_1-seasonality_TRUE-season_left_out_2008-2009.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 1-max_lag_1-seasonality_TRUE-season_left_out_2009-2010.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 1-max_lag_1-seasonality_TRUE-season_left_out_2010-2011.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 1-max_lag_1-seasonality_TRUE-season_left_out_none.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 10-max_lag_1-seasonality_TRUE-season_left_out_1997-1998.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 10-max_lag_1-seasonality_TRUE-season_left_out_1998-1999.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 10-max_lag_1-seasonality_TRUE-season_left_out_1999-2000.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 10-max_lag_1-seasonality_TRUE-season_left_out_2000-2001.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 10-max_lag_1-seasonality_TRUE-season_left_out_2001-2002.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 10-max_lag_1-seasonality_TRUE-season_left_out_2002-2003.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 10-max_lag_1-seasonality_TRUE-season_left_out_2003-2004.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 10-max_lag_1-seasonality_TRUE-season_left_out_2004-2005.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 10-max_lag_1-seasonality_TRUE-season_left_out_2005-2006.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 10-max_lag_1-seasonality_TRUE-season_left_out_2006-2007.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 10-max_lag_1-seasonality_TRUE-season_left_out_2007-2008.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 10-max_lag_1-seasonality_TRUE-season_left_out_2008-2009.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 10-max_lag_1-seasonality_TRUE-season_left_out_2009-2010.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 10-max_lag_1-seasonality_TRUE-season_left_out_2010-2011.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 10-max_lag_1-seasonality_TRUE-season_left_out_none.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 2-max_lag_1-seasonality_TRUE-season_left_out_1997-1998.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 2-max_lag_1-seasonality_TRUE-season_left_out_1998-1999.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 2-max_lag_1-seasonality_TRUE-season_left_out_1999-2000.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 2-max_lag_1-seasonality_TRUE-season_left_out_2000-2001.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 2-max_lag_1-seasonality_TRUE-season_left_out_2001-2002.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 2-max_lag_1-seasonality_TRUE-season_left_out_2002-2003.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 2-max_lag_1-seasonality_TRUE-season_left_out_2003-2004.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 2-max_lag_1-seasonality_TRUE-season_left_out_2004-2005.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 2-max_lag_1-seasonality_TRUE-season_left_out_2005-2006.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 2-max_lag_1-seasonality_TRUE-season_left_out_2006-2007.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 2-max_lag_1-seasonality_TRUE-season_left_out_2007-2008.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 2-max_lag_1-seasonality_TRUE-season_left_out_2008-2009.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 2-max_lag_1-seasonality_TRUE-season_left_out_2009-2010.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 2-max_lag_1-seasonality_TRUE-season_left_out_2010-2011.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 2-max_lag_1-seasonality_TRUE-season_left_out_none.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 3-max_lag_1-seasonality_TRUE-season_left_out_1997-1998.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 3-max_lag_1-seasonality_TRUE-season_left_out_1998-1999.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 3-max_lag_1-seasonality_TRUE-season_left_out_1999-2000.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 3-max_lag_1-seasonality_TRUE-season_left_out_2000-2001.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 3-max_lag_1-seasonality_TRUE-season_left_out_2001-2002.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 3-max_lag_1-seasonality_TRUE-season_left_out_2002-2003.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 3-max_lag_1-seasonality_TRUE-season_left_out_2003-2004.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 3-max_lag_1-seasonality_TRUE-season_left_out_2004-2005.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 3-max_lag_1-seasonality_TRUE-season_left_out_2005-2006.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 3-max_lag_1-seasonality_TRUE-season_left_out_2006-2007.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 3-max_lag_1-seasonality_TRUE-season_left_out_2007-2008.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 3-max_lag_1-seasonality_TRUE-season_left_out_2008-2009.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 3-max_lag_1-seasonality_TRUE-season_left_out_2009-2010.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 3-max_lag_1-seasonality_TRUE-season_left_out_2010-2011.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 3-max_lag_1-seasonality_TRUE-season_left_out_none.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 4-max_lag_1-seasonality_TRUE-season_left_out_1997-1998.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 4-max_lag_1-seasonality_TRUE-season_left_out_1998-1999.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 4-max_lag_1-seasonality_TRUE-season_left_out_1999-2000.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 4-max_lag_1-seasonality_TRUE-season_left_out_2000-2001.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 4-max_lag_1-seasonality_TRUE-season_left_out_2001-2002.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 4-max_lag_1-seasonality_TRUE-season_left_out_2002-2003.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 4-max_lag_1-seasonality_TRUE-season_left_out_2003-2004.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 4-max_lag_1-seasonality_TRUE-season_left_out_2004-2005.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 4-max_lag_1-seasonality_TRUE-season_left_out_2005-2006.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 4-max_lag_1-seasonality_TRUE-season_left_out_2006-2007.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 4-max_lag_1-seasonality_TRUE-season_left_out_2007-2008.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 4-max_lag_1-seasonality_TRUE-season_left_out_2008-2009.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 4-max_lag_1-seasonality_TRUE-season_left_out_2009-2010.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 4-max_lag_1-seasonality_TRUE-season_left_out_2010-2011.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 4-max_lag_1-seasonality_TRUE-season_left_out_none.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 5-max_lag_1-seasonality_TRUE-season_left_out_1997-1998.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 5-max_lag_1-seasonality_TRUE-season_left_out_1998-1999.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 5-max_lag_1-seasonality_TRUE-season_left_out_1999-2000.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 5-max_lag_1-seasonality_TRUE-season_left_out_2000-2001.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 5-max_lag_1-seasonality_TRUE-season_left_out_2001-2002.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 5-max_lag_1-seasonality_TRUE-season_left_out_2002-2003.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 5-max_lag_1-seasonality_TRUE-season_left_out_2003-2004.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 5-max_lag_1-seasonality_TRUE-season_left_out_2004-2005.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 5-max_lag_1-seasonality_TRUE-season_left_out_2005-2006.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 5-max_lag_1-seasonality_TRUE-season_left_out_2006-2007.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 5-max_lag_1-seasonality_TRUE-season_left_out_2007-2008.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 5-max_lag_1-seasonality_TRUE-season_left_out_2008-2009.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 5-max_lag_1-seasonality_TRUE-season_left_out_2009-2010.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 5-max_lag_1-seasonality_TRUE-season_left_out_2010-2011.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 5-max_lag_1-seasonality_TRUE-season_left_out_none.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 6-max_lag_1-seasonality_TRUE-season_left_out_1997-1998.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 6-max_lag_1-seasonality_TRUE-season_left_out_1998-1999.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 6-max_lag_1-seasonality_TRUE-season_left_out_1999-2000.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 6-max_lag_1-seasonality_TRUE-season_left_out_2000-2001.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 6-max_lag_1-seasonality_TRUE-season_left_out_2001-2002.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 6-max_lag_1-seasonality_TRUE-season_left_out_2002-2003.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 6-max_lag_1-seasonality_TRUE-season_left_out_2003-2004.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 6-max_lag_1-seasonality_TRUE-season_left_out_2004-2005.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 6-max_lag_1-seasonality_TRUE-season_left_out_2005-2006.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 6-max_lag_1-seasonality_TRUE-season_left_out_2006-2007.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 6-max_lag_1-seasonality_TRUE-season_left_out_2007-2008.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 6-max_lag_1-seasonality_TRUE-season_left_out_2008-2009.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 6-max_lag_1-seasonality_TRUE-season_left_out_2009-2010.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 6-max_lag_1-seasonality_TRUE-season_left_out_2010-2011.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 6-max_lag_1-seasonality_TRUE-season_left_out_none.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 7-max_lag_1-seasonality_TRUE-season_left_out_1997-1998.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 7-max_lag_1-seasonality_TRUE-season_left_out_1998-1999.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 7-max_lag_1-seasonality_TRUE-season_left_out_1999-2000.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 7-max_lag_1-seasonality_TRUE-season_left_out_2000-2001.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 7-max_lag_1-seasonality_TRUE-season_left_out_2001-2002.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 7-max_lag_1-seasonality_TRUE-season_left_out_2002-2003.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 7-max_lag_1-seasonality_TRUE-season_left_out_2003-2004.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 7-max_lag_1-seasonality_TRUE-season_left_out_2004-2005.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 7-max_lag_1-seasonality_TRUE-season_left_out_2005-2006.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 7-max_lag_1-seasonality_TRUE-season_left_out_2006-2007.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 7-max_lag_1-seasonality_TRUE-season_left_out_2007-2008.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 7-max_lag_1-seasonality_TRUE-season_left_out_2008-2009.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 7-max_lag_1-seasonality_TRUE-season_left_out_2009-2010.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 7-max_lag_1-seasonality_TRUE-season_left_out_2010-2011.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 7-max_lag_1-seasonality_TRUE-season_left_out_none.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 8-max_lag_1-seasonality_TRUE-season_left_out_1997-1998.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 8-max_lag_1-seasonality_TRUE-season_left_out_1998-1999.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 8-max_lag_1-seasonality_TRUE-season_left_out_1999-2000.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 8-max_lag_1-seasonality_TRUE-season_left_out_2000-2001.rds
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inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 8-max_lag_1-seasonality_TRUE-season_left_out_2004-2005.rds
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inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 8-max_lag_1-seasonality_TRUE-season_left_out_2006-2007.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 8-max_lag_1-seasonality_TRUE-season_left_out_2007-2008.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 8-max_lag_1-seasonality_TRUE-season_left_out_2008-2009.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 8-max_lag_1-seasonality_TRUE-season_left_out_2009-2010.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 8-max_lag_1-seasonality_TRUE-season_left_out_2010-2011.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 8-max_lag_1-seasonality_TRUE-season_left_out_none.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 9-max_lag_1-seasonality_TRUE-season_left_out_1997-1998.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 9-max_lag_1-seasonality_TRUE-season_left_out_1998-1999.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 9-max_lag_1-seasonality_TRUE-season_left_out_1999-2000.rds
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inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 9-max_lag_1-seasonality_TRUE-season_left_out_2003-2004.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 9-max_lag_1-seasonality_TRUE-season_left_out_2004-2005.rds
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inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 9-max_lag_1-seasonality_TRUE-season_left_out_2006-2007.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 9-max_lag_1-seasonality_TRUE-season_left_out_2007-2008.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 9-max_lag_1-seasonality_TRUE-season_left_out_2008-2009.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 9-max_lag_1-seasonality_TRUE-season_left_out_2009-2010.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 9-max_lag_1-seasonality_TRUE-season_left_out_2010-2011.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-Region 9-max_lag_1-seasonality_TRUE-season_left_out_none.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-X-max_lag_1-seasonality_TRUE-season_left_out_1997-1998.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-X-max_lag_1-seasonality_TRUE-season_left_out_1998-1999.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-X-max_lag_1-seasonality_TRUE-season_left_out_1999-2000.rds
inst/estimation/kcde/copula-fits/kcde-copula-fits-X-max_lag_1-seasonality_TRUE-season_left_out_2000-2001.rds
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