Man pages for reichlab/covidHubUtils
Utility functions for the COVID-19 forecast hub
| aggregate_to_weekly | Aggregate daily data to weekly data |
| align_forecasts | Add reference dates and relative horizons to a dataframe of... |
| align_forecasts_one_temporal_resolution | Internal function that add reference dates and relative... |
| as_covid_hub_forecasts | Reformat model outputs stored as a 'model_output_tbl' class... |
| calc_cramers_dist_equal_space | Approximate the Cramer’s distance between a pair of... |
| calc_cramers_dist_one_model_pair | Calculate the approximated Cramer’s distance between a pair... |
| calc_cramers_dist_unequal_space | Approximate the Cramer’s distance between a pair of... |
| calc_forecast_week_end_date | Calculate end date for the week a forecast was made. |
| calc_submission_due_date | Calculate the submission date that corresponds to a given... |
| calc_target_end_date | Calculate end date for a forecast is targeting. |
| calc_target_week_end_date | Calculate end date for the week a forecast is targeting. |
| covidHubUtils | covidHubUtils - Utility functions for the COVID-19 forecast... |
| date_to_datetime | Create a datetime by appending time and/or UTC timezone to... |
| date_to_week_end_date | Calculate the date of the Saturday that ends the MMWR... |
| download_raw_nytimes | Download historical raw truth data from NYTimes and write to... |
| get_all_models | Get all valid model names |
| get_forecast_file_path | Generate paths to forecast files submitted on a range of... |
| get_hub_locations | Create data/hub_locations.rda for loading data from 'zoltar'... |
| get_model_designations | Get model designations from metadata |
| get_model_forecast_history_local_zoltar | Get forecast submission history of a specified model from... |
| get_model_metadata | Get Hub model metadata |
| get_models_local_zoltar | Get id and abbrevations of all models available in a... |
| get_plot_forecast_data | Combine 'load_truth()' and 'pivot_forecasts_wider()' |
| get_truth_path | Construct the file path to a truth file |
| get_valid_target_list | Create data/hub_targets_us.rda and data/hub_targets_ecdc.rda |
| get_zoltar_project_id_local_zoltar | Get Zoltar project id from local zoltar sqlite file |
| get_zoltar_project_url | Get Zoltar project URL |
| hub_locations | Information on locations in the COVID-19 Forecast Hub |
| hub_locations_ecdc | Available locations in the ECDC Hub |
| hub_locations_flusight | Available locations in the FluSight Hub |
| hub_targets_ecdc | Available targets in the ECDC Hub |
| hub_targets_flusight | Available targets in the FluSight Hub |
| hub_targets_us | Available targets in the US Hub |
| join_with_hub_locations | Add stored information about location name and population by... |
| load_forecast_files_repo | Read in a set of forecast files from a repository without... |
| load_forecasts | Load all available forecasts submitted around forecast dates... |
| load_forecasts_local_zoltar | Load all available forecasts submitted on 'forecast_dates'... |
| load_forecasts_repo | Load all available forecasts submitted on 'forecast_dates'... |
| load_forecasts_zoltar | Load all available forecasts submitted on 'forecast_dates'... |
| load_from_coviddata | load truth data from covidData |
| load_from_hub_repo | load truth data from a local clone of forecast hub repo |
| load_latest_forecasts | Load covid forecasts from local hub repo or Zoltar. Return... |
| load_latest_forecasts_repo | Load the most recent forecasts of all that were submitted on... |
| load_latest_forecasts_zoltar | Load the most recent forecasts of all that were submitted on... |
| load_truth | Load truth data under multiple target variables from multiple... |
| name_to_fips | Get FIPS or CBSA codes from county or metropolitan area... |
| pivot_forecasts_wider | Return a data frame of forecasts with predictive quantiles in... |
| plot_forecast | Plot forecasts and optional truth for only one selected... |
| plot_forecasts | Plot forecasts and optional truth for only one selected... |
| preprocess_hospitalization | Preprocess raw hospitalization data into Cumulative/Incident... |
| preprocess_jhu | Preprocess historical raw truth data from JHU CSSE into... |
| preprocess_nytimes | Preprocess raw truth data from NYTimes into... |
| preprocess_visualization_truth | Preprocess raw truth data from JHU CSSE into... |
| reformat_forecasts | Reformat forecast data frame returned from zoltar query This... |
| score_forecasts | Score forecasts |
| setup_zoltar_connection | Set up Zoltar connection |
