load_from_hub_repo: load truth data from a local clone of forecast hub repo

In reichlab/covidHubUtils: Utility functions for the COVID-19 forecast hub

load truth data from a local clone of forecast hub repo

Description

load truth data from a local clone of forecast hub repo

Usage

load_from_hub_repo(
  target_variable,
  truth_source,
  repo_path,
  temporal_resolution,
  truth_end_date,
  data_location,
  hub = c("US", "ECDC", "FluSight")
)

Arguments

target_variable	string specifying target type It should be one or more of "cum death", "inc case", "inc death", "inc hosp".
truth_source	character vector specifying where the truths will be loaded from: currently support "JHU", "NYTimes", "HealthData" and "ECDC".
repo_path	path to local clone or remote of the corresponding prediction hub repository.
temporal_resolution	string specifying temporal resolution to include: one of 'daily' or 'weekly'
truth_end_date	date to include the last available truth point in 'yyyy-mm-dd' format.
data_location	character specifying the location of truth data. Currently only supports "local_hub_repo" or "remote_hub_repo".
hub	character, which hub to use. Default is "US". Other options are "ECDC" and "FluSight".

Value

a data.frame with columns location, target_end_date, target_variable and value

reichlab/covidHubUtils documentation built on Feb. 6, 2024, 1:42 p.m.