Files in reichlab/dengue-ssr-prediction

Prediction via kernel conditional density estimation with non-product kernel specifications

.Rbuildignore

.gitignore

DESCRIPTION

NAMESPACE

R/kernel-fns.R R/ssr-dengue-competition.R R/ssr-estimation.R R/ssr-kernel-interaction.R R/ssr-prediction.R R/ssr-setup.R R/ssr-utility.R README.md

competition-fits/fit-competition-ssr-ph12-Iquitos.Rdata

competition-fits/fit-competition-ssr-ph12-San_Juan.Rdata

competition-fits/fit-competition-ssr-ph16-Iquitos.Rdata

competition-fits/fit-competition-ssr-ph16-San_Juan.Rdata

competition-fits/fit-competition-ssr-ph20-Iquitos.Rdata

competition-fits/fit-competition-ssr-ph20-San_Juan.Rdata

competition-fits/fit-competition-ssr-ph24-Iquitos.Rdata

competition-fits/fit-competition-ssr-ph24-San_Juan.Rdata

competition-fits/fit-competition-ssr-ph28-Iquitos.Rdata

competition-fits/fit-competition-ssr-ph28-San_Juan.Rdata

competition-fits/fit-competition-ssr-ph32-Iquitos.Rdata

competition-fits/fit-competition-ssr-ph32-San_Juan.Rdata

competition-fits/fit-competition-ssr-ph36-Iquitos.Rdata

competition-fits/fit-competition-ssr-ph36-San_Juan.Rdata

competition-fits/fit-competition-ssr-ph4-Iquitos.Rdata

competition-fits/fit-competition-ssr-ph4-San_Juan.Rdata

competition-fits/fit-competition-ssr-ph40-Iquitos.Rdata

competition-fits/fit-competition-ssr-ph40-San_Juan.Rdata

competition-fits/fit-competition-ssr-ph44-Iquitos.Rdata

competition-fits/fit-competition-ssr-ph44-San_Juan.Rdata

competition-fits/fit-competition-ssr-ph48-Iquitos.Rdata

competition-fits/fit-competition-ssr-ph48-San_Juan.Rdata

competition-fits/fit-competition-ssr-ph52-Iquitos.Rdata

competition-fits/fit-competition-ssr-ph52-San_Juan.Rdata

competition-fits/fit-competition-ssr-ph8-Iquitos.Rdata

competition-fits/fit-competition-ssr-ph8-San_Juan.Rdata

inst/code/first-pass-ssr.R inst/code/pathogen-interaction-first-pass.R inst/code/preprocess_data.R inst/code/ssr-competition/create-run-fit-competition-ssr.R inst/code/ssr-competition/fit-competition-ssr.R inst/code/ssr-competition/make-competition-predictions-test-phase.R inst/code/ssr-competition/make-competition-predictions-train-phase.R inst/code/ssr-poster/competition-baseline-results-summary-plots.R inst/code/ssr-poster/competition-baseline-sarima-fit.R inst/code/ssr-poster/create-run-fit-poster-ssr.R inst/code/ssr-poster/fit-poster-ssr.R inst/code/ssr-poster/initial-data-plot.R inst/code/ssr-poster/periodic-kernel.R inst/code/ssr-poster/results-summary-plots.R inst/code/ssr-poster/sarima-fit.R inst/code/ssr-poster/ssr-fit-predictions.R inst/code/ssr-poster/ssr-fit-predictive-bw.R inst/code/ssr-poster/weekly-kde-predictions.R inst/code/ssr-poster/weighted-kde.R inst/code/ssr-poster/x-space-kernel.R

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph1-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph10-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph11-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph12-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph13-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph14-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph15-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph16-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph17-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph18-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph19-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph2-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph20-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph21-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph22-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph23-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph24-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph25-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph26-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph27-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph28-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph29-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph3-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph30-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph31-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph32-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph33-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph34-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph35-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph36-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph37-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph38-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph39-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph4-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph40-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph41-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph42-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph43-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph44-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph45-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph46-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph47-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph48-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph49-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph5-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph50-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph51-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph52-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph6-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph7-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph8-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/fit-poster-ssr-ph9-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph1-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph10-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph11-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph12-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph13-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph14-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph15-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph16-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph17-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph18-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph19-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph2-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph20-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph21-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph22-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph23-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph24-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph25-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph26-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph27-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph28-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph29-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph3-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph30-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph31-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph32-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph33-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph34-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph35-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph36-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph37-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph38-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph39-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph4-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph40-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph41-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph42-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph43-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph44-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph45-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph46-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph47-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph48-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph49-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph5-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph50-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph51-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph52-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph6-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph7-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph8-San_Juan.Rdata

inst/intermediate-results/ssr-poster/poster-fits/updated-fit-poster-ssr-ph9-San_Juan.Rdata

inst/intermediate-results/ssr-poster/predictions/competition-baseline-sarima-predictions.Rdata

inst/intermediate-results/ssr-poster/predictions/sarima-predictions.Rdata

inst/intermediate-results/ssr-poster/predictions/ssr-predictions.Rdata

method-description/GrandMacros.tex

method-description/SSRbib.bib

method-description/description.Rnw

method-description/description.pdf method-description/figure/SJPRWeeklyCaseCounts-1.pdf method-description/figure/SJPRWeeklyCaseCounts2-1.pdf

method-description/kernel-of-truth-brief-description.Rnw

src/Makevars

src/Makevars.win

src/utility.c

src/utility.h

tests/testthat/run-tests.R tests/testthat/test-kernel-fns.R tests/testthat/test-ssr-estimation.R tests/testthat/test-ssr-kernel-interaction.R tests/testthat/test-ssr-prediction.R tests/testthat/test-ssr-setup.R tests/testthat/test-ssr-utility.R

reichlab/dengue-ssr-prediction documentation built on May 27, 2019, 4:53 a.m.