Description Usage Arguments Value
ActiveDriverWGS analysis of cancer mutation information
1 2 | find_drivers(prepared_elements, mutations_file, filter_hyper_MB = 30,
mc.cores = 1, recovery_dir = NA)
|
prepared_elements |
the elements and active sites to analyze, as prepared by |
mutations_file |
path to a tab deliminated text file with 6 columns (chromosome, start position, end position, reference allele, alternate allele, patient identifier) |
filter_hyper_MB |
numeric specifying the mutation frequency to filter. Default value is 30 |
mc.cores |
numeric indicating the number of computing cores to use. Default value is 1. |
recovery_dir |
path to a directory for ActiveDriverWGS to store intermediate computations in. In the case that find_drivers does not complete, run it again with the same value for this parameter, and it will read the intermediate computations rather than compute them again. Please specify a different directory, or delete the ActiveDriverWGS data in previously used directory, if running with different data. Default value is NA, and find_drivers will not save any intermediate information. |
data.frame containing all results from the ActiveDriverWGS analysis
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