Man pages for reyzaguirre/st4gi
Statistical tools for genetic improvement

a01dataData for an alpha (0,1) design
ammiAMMI or GGE with data at plot level
ammi.gxeAMMI or GGE with data from an interaction means matrix
aov.fANOVA for a factorial experiment
aov.lxtAnalysis for a Line x Tester genetic design.
aov.metANOVA for MET with a RCBD
aov.rcbdANOVA for a RCBD
ascData for a 2-factor factorial with a CRD
aslAdd non significant lines
audpcArea Under the Disease Progress Curve
bm2ptbBiomart to potatobase format
cdtCompute derived variables for potato and sweetpotato
check.dataCheck consistency for potato and sweetpotato experimental...
check.freqCheck frequencies for complete replications
check.namesCheck fieldbook factors and variables names for potato and...
check.numericCheck fieldbook variables are numeric
check.posCheck row and column positions
ck.abdCheck data for an ABD
ck.crdCheck data for a CRD
ck.fCheck data for a full factorial
ck.fqCheck frequencies
ck.fsCheck factors structure
ck.lxtCheck data for a line by tester genetic design
ck.posCheck row and column positions
ck.rcbdCheck data for a RCBD
ck.wCheck data for a Wescott layout
clean.dataClean potato and sweetpotato data
conplotPlot connectivity among trials
convert.coCO numbers
cr.a01dAlpha (0,1) design
cr.abdAugmented Block Design
cr.crdCompletely Randomized Design
create.ddCreate potatobase and sweetpotatobase design and data files
create.fbCreate potato and sweetpotato fieldbook
create.mdCreate metadata template file
cr.fCreate design for a factorial experiment
cr.lsdLatin Square Design
cr.rcbdRandomized Complete Block Design
cr.spldSplit-Plot Design
cr.strdStrip-Split-Plot Design
cr.wUnreplicated experiment with a grid of checks
docompDo computations over some factors
dtrData transformations
ecmEstimate Genotypic and Phenotypic Covariance and Correlation...
elstonElston Index
factorsFactorization
friedman.tFriedman test
get.invalid.namesGet column names not defined in crop ontology
lbb3c3Data for a late blight experiment
lxtLine by tester data
megaclonesSome variables for a multi-environment trial (MET)
megaclones2Some variables for a multi-environment trial (MET)
met8x12Yields for a multi-environment trial (MET)
msdplotPlot means and standard deviations with a dotplot
mve.fEstimation of missing values for a factorial experiment
mve.metEstimation of missing values for a MET in a RCBD
mve.rcbdEstimation of missing values for a RCBD
pesekbakerPesek-Baker Index
pjpz09Data for a yield trial
plot.st4gi_ammiAMMI or GGE biplots
plot.st4gi_dcData consistency visualization
plot.st4gi_taiTai plot
potatostressData for a yield trial
potatoyieldData for a yield trial
ptfsData for 5 potato trials
ptontPotato ontology
rsaRegression Stability Analysis
rts1Response to selection for a single experiment
rts2Response to selection with several locations
rts3Response to selection with several locations and years
rts4Response to selection with several locations in two steps...
setnaSet values to 'NA' for potato and sweetpotato data.
setzeroSet values to '0' for potato and sweetpotato data.
spgSome variables for a multi-environment trial (MET)
spontSweetpotato ontology
ssg1to3Stage selection gain from 1 to 3 stages
stiCompute stress tolerance indices
taiTai's stability analysis
reyzaguirre/st4gi documentation built on March 29, 2025, 10:38 p.m.