In rforbiodatascience22/group_3_package: Central Dogma Package - DNA To Amino Acid Sequence (One Line, Title Case)

knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>"
)

Installing Rbosome package

devtools::install_github('rforbiodatascience22/group_3_package')

Loading Rbosome package

library(Rbosome)

Package's functionality

Rbosome package delivers an easy way to work with the central dogma of molecular biology.

It provides basic functions to:

• create a random DNA strand

• transform DNA to RNA

• transform RNA to a list of codons

• translate RNA codons to letter code of amino acids

• generate an amino acids' abundance plot

---

Functions' usage - example

Create a DNA string consisting of 90 nucleotides:

set.seed(26)
DNA_seq <- ATGC(90)
DNA_seq

\newpage

Transform DNA string to RNA

RNA_seq <- DNA_to_RNA(DNA_seq)
RNA_seq

Make a list of RNA_string's codons

codons <- rna_transform(RNA_seq)
codons

Translate codons to amino acids

AA_seq = translate(codons)
AA_seq

Create abundance plot

aa_abundance_plot(AA_seq)

rforbiodatascience22/group_3_package documentation built on April 7, 2022, 4:55 a.m.