rformassspectrometry/MetaboAnnotation
Utilities for Annotation of Metabolomics Data

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Functions
172
Source code
22
Man pages
11
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rformassspectrometry/MetaboAnnotation: Utilities for Annotation of Metabolomics Data
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API

API for rformassspectrometry/MetaboAnnotation
Utilities for Annotation of Metabolomics Data

Global functions
$,Matched-method Man page
$,MatchedSpectra-method Man page
.addMatches Source code
.check_bpparam Source code
.cnt Source code
.colnames Source code
.compare_spectra_parms_list Source code
.createChoices Source code
.create_dt Source code
.dollar Source code
.extract_elements Source code
.fill_index Source code
.findMatchesIdxs Source code
.getFormulaMatches Source code
.getMatches Source code
.getMatchesMzRt Source code
.get_matches_spectra Source code
.iterative_grouping Source code
.mass_to_mz_df Source code
.match_spectra Source code
.match_spectra_without_precursor Source code
.matchedData Source code
.matched_spectra Source code
.mz_to_mass_df Source code
.nelements Source code
.nelements_t Source code
.objectToMatch Source code
.plotlySpectraMirror Source code
.plotly_peaks Source code
.randomize_grouping Source code
.subset_matches_nodim Source code
.subset_qt Source code
.valid_adduct Source code
.valid_threshfun Source code
.validate_assay Source code
.validate_dbfile Source code
.validate_matches_content Source code
.validate_matches_format Source code
.validate_qt Source code
CompAnnotationSource Man page
CompAnnotationSource-class Man page
CompDbSource Man page Source code
CompDbSource-class Man page
CompareSpectraParam Man page Source code
CompareSpectraParam-class Man page
Mass2MzParam Man page Source code
Mass2MzRtParam Man page Source code
MassBankSource Man page Source code
MatchForwardReverseParam Man page Source code
MatchForwardReverseParam-class Man page
Matched Man page Source code
Matched-class Man page
MatchedSpectra Man page Source code
MatchedSpectra-class Man page
Mz2MassParam Man page Source code
Mz2MassRtParam Man page Source code
MzParam Man page Source code
MzRtParam Man page Source code
ScoreThresholdParam Man page Source code
SelectMatchesParam Man page Source code
SingleMatchParam Man page Source code
TopRankedMatchesParam Man page Source code
ValueParam Man page Source code
[,Matched,ANY,ANY,ANY-method Man page
[,Matched-method Man page
addMatches Man page
addMatches,Matched-method Man page
addProcessing,MatchedSpectra-method Man page
colnames,Matched-method Man page
colnames,MatchedSpectra-method Man page
createStandardMixes Man page Source code
endoapply Man page
endoapply,ANY-method Man page
endoapply,Matched-method Man page
filterMatches Man page
filterMatches,Matched,ScoreThresholdParam-method Man page
filterMatches,Matched,SelectMatchesParam-method Man page
filterMatches,Matched,SingleMatchParam-method Man page
filterMatches,Matched,TopRankedMatchesParam-method Man page
filterMatches,Matched,missing-method Man page
hidden_aliases Man page
lapply,Matched-method Man page
length,Matched-method Man page
matchFormula Man page
matchFormula,character,character-method Man page
matchFormula,character,data.frameOrSimilar-method Man page
matchFormula,data.frameOrSimilar,character-method Man page
matchFormula,data.frameOrSimilar,data.frameOrSimilar-method Man page
matchMz Man page
matchSpectra Man page
matchSpectra,Spectra,CompAnnotationSource,Param-method Man page
matchSpectra,Spectra,CompDb,Param-method Man page
matchSpectra,Spectra,CompDbSource,Param-method Man page
matchSpectra,Spectra,Spectra,CompareSpectraParam-method Man page
matchSpectra,Spectra,Spectra,MatchForwardReverseParam-method Man page
matchValues Man page
matchValues,data.frameOrSimilar,Spectra,MzParam-method Man page
matchValues,data.frameOrSimilar,Spectra,MzRtParam-method Man page
matchValues,data.frameOrSimilar,data.frameOrSimilar,Mass2MzParam Man page
matchValues,data.frameOrSimilar,data.frameOrSimilar,Mass2MzRtPar Man page
matchValues,data.frameOrSimilar,data.frameOrSimilar,Mz2MassParam Man page
matchValues,data.frameOrSimilar,data.frameOrSimilar,Mz2MassRtPar Man page
matchValues,data.frameOrSimilar,data.frameOrSimilar,MzParam-meth Man page
matchValues,data.frameOrSimilar,data.frameOrSimilar,MzRtParam-me Man page
matchValues,data.frameOrSimilar,data.frameOrSimilar,ValueParam-m Man page
matchValues,data.frameOrSimilar,numeric,Mass2MzParam-method Man page
matchValues,data.frameOrSimilar,numeric,Mz2MassParam-method Man page
matchValues,data.frameOrSimilar,numeric,MzParam-method Man page
matchValues,data.frameOrSimilar,numeric,ValueParam-method Man page
matchValues,numeric,Spectra,MzParam-method Man page
matchValues,numeric,data.frameOrSimilar,Mass2MzParam-method Man page
matchValues,numeric,data.frameOrSimilar,Mz2MassParam-method Man page
matchValues,numeric,data.frameOrSimilar,MzParam-method Man page
matchValues,numeric,data.frameOrSimilar,ValueParam-method Man page
matchValues,numeric,numeric,Mass2MzParam-method Man page
matchValues,numeric,numeric,Mz2MassParam-method Man page
matchValues,numeric,numeric,ValueParam-method Man page
matchedData Man page
matchedData,Matched-method Man page
matchedData,MatchedSpectra-method Man page
matches Man page Source code
metadata,CompAnnotationSource-method Man page
metadata,CompDbSource-method Man page
plotSpectraMirror,MatchedSpectra-method Man page
pruneTarget Man page Source code
query,Matched-method Man page
queryIndex Man page Source code
queryVariables Man page
queryVariables,Matched-method Man page
queryVariables,MatchedSpectra-method Man page
scoreVariables Man page Source code
setBackend,MatchedSpectra,MsBackend-method Man page
show,CompAnnotationSource-method Man page
show,CompDbSource-method Man page
show,Matched-method Man page
spectraData,MatchedSpectra-method Man page
spectraVariables,MatchedSpectra-method Man page
target Man page Source code
targetIndex Man page Source code
targetVariables Man page
targetVariables,Matched-method Man page
targetVariables,MatchedSpectra-method Man page
validateMatchedSpectra Man page Source code
whichQuery Man page Source code
whichTarget Man page Source code
rformassspectrometry/MetaboAnnotation documentation built on March 12, 2024, 4:09 a.m.

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