NEWS.md

In rformassspectrometry/MsBackendMgf: Mass Spectrometry Data Backend for Mascot Generic Format (mgf) Files

MsBackendMgf 1.11

Changes in 1.11.2

• Import generic methods from ProtGenerics. Requires ProtGenerics version 1.35.3.

Changes in 1.11.1

• Small runtime improvements in MGF importer.

Changes in 1.11.0

• Bioconductor 3.19 developmental branch.

MsBackendMgf 1.7

Changes in 1.7.5

• Support import of MS levels from MGF files.

Changes in 1.7.4

• Fix bug in import when m/z values are not sorted.

Changes in 1.7.3

• Enforce m/z values to be increasingly ordered while importing.

Changes in 1.7.2

• Run the full unit test suite from the Spectra package to check validity of the MsBackendMgf.

Changes in 1.7.1

• Use compress = FALSE for NumericList.

Changes in 1.7.0

• Bioconductor 3.17 developmental branch.

MsBackendMgf 1.5

Changes in 1.5.1

• Fix export method to fail if one or more columns contain either S4 classes or list-like structures.

MsBackendMgf 1.3

Changes in 1.3.3

• Import coreSpectraVariables from Spectra.

Changes in 1.3.2

• Adapt the spectraVariableMapping to Spectra version >= 1.5.8.

Changes in 1.3.1

• Run additional unit test suits defined in Spectra.

MsBackendMgf 1.1

Changes in 1.1.3

• Fix issue with MGF files lacking peak data.

Changes in 1.1.2

• Export precursor charge in the expected format (issue #16).

Changes in 1.1.1

• Add an example to the vignette describing how to export only selected spectra variables to the MGF file.

MsBackendMgf 0.99

Changes in 0.99.3

• Export readMgf function.

Changes in 0.99.2

• Update installation description in the vignette.

Changes in 0.99.1

• Directly call internal function from MsBackendMgf to avoid parallel processing error (function not found) on Windows.

MsBackendMgf 0.2

Changes in 0.2.2

• Add examples how to use the MsBackendMgf backend to export data to mgf files (issue #4.

Changes in 0.2.0

• Add export method to support exporting of data from a Spectra object in mgf file format.
• Import all fields from an MGF file.
• Rename MGF field names to spectra variables based on spectraVariableMapping.
• Support for MGF files with different field names.

rformassspectrometry/MsBackendMgf documentation built on Sept. 29, 2024, 4:35 p.m.