NEWS.md

In rformassspectrometry/MsqlBackend: SQL-based Mass Spectrometry Data Backend

MsBackendSql 1.3

Changes in 1.3.5

• Improve input argument check and error message for backendInitialize() for MsBackendOfflineSql.
• Update documentation adding () to all function names.

Changes in 1.3.4

• Ensure primary keys from the database are in the correct order for backendInitialize().

Changes in 1.3.3

• Import method generics from ProtGenerics.

Changes in 1.3.2

• Add a dedicated setBackend method for MsBackendSql and MsBackendOfflineSql backends (issue #17).

Changes in 1.3.1

• Add description on the use/advantages of different SQL database systems to the vignette.

MsBackendSql 1.1

Changes in 1.1.5

• Add dbconn methods for MsBackendSql and MsBackendOfflineSql.

Changes in 1.1.4

• Improve performance of createMsBackendSqlDatabase by using also parallel processing for the peaksData call.

Changes in 1.1.3

• Add support for setBackend to MsBackendOfflineSql.

Changes in 1.1.2

• Mention in documentation that MsBackendSql can not be saved to disk.
• Expand vignette adding related documentation.

Changes in 1.1.1

• Fix for filterRt avoiding to filter if range is infinite.

MsBackendSql 0.99

Changes in 0.99.7

• Decrease required R version to 4.2.

Changes in 0.99.6

• Add mzR to Suggests to ensure package vignettes can be build properly.

Changes in 0.99.5

• Add MsBackendOfflineSql backend that re-connects to the database for each query.

Changes in 0.99.4

• Add backendBpparam method to ensure parallel processing is disabled for the MsBackendSql backend.

Changes in 0.99.3

• Add backendMerge method.
• Add parameter data to backendInitialize to allow creating a new MsBackendSql database and store the values from data in it. This enables the use of Spectra,setBackend to convert any backend to a MsBackendSql.
• Implement supportsSetBackend to enable setBackend,Spectra,MsBackendSql.

Changes in 0.99.2

• Evaluate validity of the MsBackendSql using the full unit test suite from the Spectra package.

Changes in 0.99.1

• Address Kayla's package review comments.

Changes in 0.99.0

• Prepare the package for submission to Bioconductor.

MsBackendSql 0.98

Changes in 0.98.1

• Rename MsqlBackend to MsBackendSql.

Changes in 0.98.0

• Add vignette.

MsBackendSql 0.1

Changes in 0.1.0

• Add parameter blob to allow storing m/z and intensity values as BLOB data type in the database. MsBackendSql will use different functions to retrieve data from a database with this type of storage.

MsBackendSql 0.0

Changes in 0.0.5

• Add filterMsLevel method.
• Add filterRt method.
• Add filterDataOrigin method.
• Add filterPrecursorMzRange method.
• Add filterPrecursorMzValues method.

Changes in 0.0.4

• Add optional parameter tempfile.

Changes in 0.0.3

• Add peaksVariables methods and add support for parameter columns in peaksData (Requires Spectra version 1.15.17).

Changes in 0.0.2

• First full implementation of MsBackendSql.

rformassspectrometry/MsqlBackend documentation built on March 28, 2024, 7:16 p.m.