Files in rformassspectrometry/Spectra
Spectra Infrastructure for Mass Spectrometry Data
.Rbuildignore
.editorconfig
.github/.gitignore
.github/workflows/check-bioc.yml
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/AllGenerics.R
R/MsBackend-functions.R
R/MsBackend.R
R/MsBackendCached.R
R/MsBackendDataFrame-functions.R
R/MsBackendDataFrame.R
R/MsBackendHdf5Peaks-functions.R
R/MsBackendHdf5Peaks.R
R/MsBackendMemory-functions.R
R/MsBackendMemory.R
R/MsBackendMzR-functions.R
R/MsBackendMzR.R
R/Spectra-estimatePrecursorMz.R
R/Spectra-functions.R
R/Spectra-neutralLoss.R
R/Spectra.R
R/countIdentifications.R
R/fft_spectrum.R
R/functions-util.R
R/hidden_aliases.R
R/mz-delta-functions.R
R/peak-list-functions.R
R/peaks-functions.R
R/plotting-functions.R
R/zzz.R
README.md
_pkgdown.yml
data/fft_spectrum.RData
inst/CITATION
inst/test_backends/README.md
inst/test_backends/test_MsBackend/test_peaks_variables.R
inst/test_backends/test_MsBackend/test_spectra_subsetting.R
inst/test_backends/test_MsBackend/test_spectra_variables.R
logo.png
man/MsBackend.Rd
man/MsBackendCached.Rd
man/Spectra.Rd
man/addProcessing.Rd
man/chunkapply.Rd
man/combinePeaks.Rd
man/combinePeaksData.Rd
man/combineSpectra.Rd
man/compareSpectra.Rd
man/countIdentifications.Rd
man/estimatePrecursorIntensity.Rd
man/estimatePrecursorMz.Rd
man/figures/logo.png
man/filterFourierTransformArtefacts.Rd
man/filterMsLevel.Rd
man/filterPeaksRanges.Rd
man/hidden_aliases.Rd
man/joinPeaks.Rd
man/neutralLoss.Rd
man/plotMzDelta.Rd
man/processingChunkSize.Rd
man/spectra-plotting.Rd
man/spectraData.Rd
man/spectraVariableMapping.Rd
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
tests/testthat.R
tests/testthat/_snaps/plotMzDelta/plotmzdelta-1000.svg
tests/testthat/_snaps/plotting-functions/plot-single-spectrum-basic.svg
tests/testthat/_snaps/plotting-functions/plot-single-spectrum-labels-ass.svg
tests/testthat/_snaps/plotting-functions/plot-single-spectrum-labels.svg
tests/testthat/_snaps/plotting-functions/plot-single-spectrum-xlim.svg
tests/testthat/_snaps/plotting-functions/plotspectra-asp05.svg
tests/testthat/_snaps/plotting-functions/plotspectra-asp2.svg
tests/testthat/_snaps/plotting-functions/plotspectra-color-each.svg
tests/testthat/_snaps/plotting-functions/plotspectra-color-peaks-label-labelcol.svg
tests/testthat/_snaps/plotting-functions/plotspectra-color-peaks-label.svg
tests/testthat/_snaps/plotting-functions/plotspectra-color-peaks.svg
tests/testthat/_snaps/plotting-functions/plotspectramirror-match-color-labelcol.svg
tests/testthat/_snaps/plotting-functions/plotspectramirror-match-color.svg
tests/testthat/_snaps/plotting-functions/plotspectramirror-plain.svg
tests/testthat/_snaps/plotting-functions/plotspectramirror-same.svg
tests/testthat/_snaps/plotting-functions/plotspectraoverlay-basic.svg
tests/testthat/_snaps/plotting-functions/plotspectraoverlay-no-axes.svg
tests/testthat/_snaps/plotting-functions/plotspectraoverlay-xlim.svg
tests/testthat/_snaps/plotting-functions/spectrum-single-peak-with-label.svg
tests/testthat/test_MsBackend-functions.R
tests/testthat/test_MsBackend.R
tests/testthat/test_MsBackendCached.R
tests/testthat/test_MsBackendDataFrame-functions.R
tests/testthat/test_MsBackendDataFrame.R
tests/testthat/test_MsBackendHdf5Peaks-functions.R
tests/testthat/test_MsBackendHdf5Peaks.R
tests/testthat/test_MsBackendMemory-functions.R
tests/testthat/test_MsBackendMemory.R
tests/testthat/test_MsBackendMzR-functions.R
tests/testthat/test_MsBackendMzR.R
tests/testthat/test_Spectra-estimatePrecursorMz.R
tests/testthat/test_Spectra-functions.R
tests/testthat/test_Spectra-neutralLoss.R
tests/testthat/test_Spectra.R
tests/testthat/test_countIdentifications.R
tests/testthat/test_functions-util.R
tests/testthat/test_peak-list-functions.R
tests/testthat/test_peaks-functions.R
tests/testthat/test_plotMzDelta.R
tests/testthat/test_plotting-functions.R
vignettes/MsBackend.Rmd
vignettes/Spectra-large-scale.Rmd
vignettes/Spectra.Rmd
vignettes/references.bib
