Files in rhenkin/visxhclust
A Shiny App for Visual Exploration of Hierarchical Clustering
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.gitignore
CONTRIBUTING.md
DESCRIPTION
LICENSE.md
NAMESPACE
NEWS.md
R/data.R
R/mod_boxplots.R
R/mod_distancematrix.R
R/mod_evaluation.R
R/mod_gapstat.R
R/mod_heatmap.R
R/mod_overview.R
R/mod_params.R
R/mod_pca.R
R/mod_significance.R
R/mod_table.R
R/plot.R
R/plot_heatmaps.R
R/run_app.R
R/server.R
R/ui.R
R/ui_sidebar.R
R/utils_clustering.R
R/utils_data.R
README.Rmd
README.md
_pkgdown.yml
cran-comments.md
data/sim_binary.rda
data/sim_logscaled.rda
data/sim_normal.rda
data/sim_normal_missing.rda
data/sim_normalannot.rda
dev/dev_init.R
dev/sim_binary.csv
dev/sim_logscaled.csv
dev/sim_normal.csv
dev/sim_normal_missing.csv
dev/sim_normalannot.csv
dev/simdata.R
docs/404.html
docs/CONTRIBUTING.html
docs/LICENSE.html
docs/articles/clusterevaluation.html
docs/articles/clusterevaluation_files/anchor-sections-1.0/anchor-sections.css
docs/articles/clusterevaluation_files/anchor-sections-1.0/anchor-sections.js
docs/articles/clusterevaluation_files/figure-html/dunn-1.png
docs/articles/clusterevaluation_files/figure-html/gapstat-1.png
docs/articles/clusterevaluation_files/header-attrs-2.11/header-attrs.js
docs/articles/clusterevaluation_files/header-attrs-2.5/header-attrs.js
docs/articles/clusterevaluation_files/header-attrs-2.7/header-attrs.js
docs/articles/clusterevaluation_files/header-attrs-2.8/header-attrs.js
docs/articles/clusterworkflow.html
docs/articles/clusterworkflow_files/anchor-sections-1.0/anchor-sections.css
docs/articles/clusterworkflow_files/anchor-sections-1.0/anchor-sections.js
docs/articles/clusterworkflow_files/figure-html/boxplots-1.png
docs/articles/clusterworkflow_files/figure-html/correlation-1.png
docs/articles/clusterworkflow_files/figure-html/heatmap-1.png
docs/articles/clusterworkflow_files/header-attrs-2.11/header-attrs.js
docs/articles/clusterworkflow_files/header-attrs-2.5/header-attrs.js
docs/articles/clusterworkflow_files/header-attrs-2.7/header-attrs.js
docs/articles/clusterworkflow_files/header-attrs-2.8/header-attrs.js
docs/articles/evaluate.gif
docs/articles/index.html
docs/articles/iterate.gif
docs/articles/load_data.gif
docs/articles/review_results.gif
docs/articles/vh_loading.gif
docs/articles/view_results.gif
docs/articles/visxhclust.html
docs/articles/visxhclust_files/header-attrs-2.11/header-attrs.js
docs/articles/visxhclust_files/header-attrs-2.8/header-attrs.js
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Rplot001.png
docs/reference/annotate_clusters.html
docs/reference/bin_df.html
docs/reference/cluster_boxplots-1.png
docs/reference/cluster_boxplots.html
docs/reference/cluster_colors.html
docs/reference/cluster_heatmaps-1.png
docs/reference/cluster_heatmaps.html
docs/reference/compute_clusters.html
docs/reference/compute_corr.html
docs/reference/compute_dmat.html
docs/reference/compute_gapstat.html
docs/reference/compute_metric.html
docs/reference/compute_pvalues.html
docs/reference/compute_rzs.html
docs/reference/correlation_heatmap.html
docs/reference/create_annotations.html
docs/reference/cut_clusters.html
docs/reference/dmat_projection-1.png
docs/reference/dmat_projection.html
docs/reference/facet_boxplot-1.png
docs/reference/facet_boxplot.html
docs/reference/index.html
docs/reference/line_plot.html
docs/reference/loadData.html
docs/reference/load_data.html
docs/reference/logscaled_df.html
docs/reference/normal_annotated.html
docs/reference/normal_df.html
docs/reference/normal_missing.html
docs/reference/optimal_score.html
docs/reference/plotClusterHeatmaps.html
docs/reference/plot_annotation_dist-1.png
docs/reference/plot_annotation_dist.html
docs/reference/plot_cluster_heatmaps.html
docs/reference/run_app.html
docs/reference/scaleData.html
docs/reference/scale_data.html
docs/reference/scale_rzs.html
docs/sitemap.xml
inst/helpfiles/boxplots_help.md
inst/helpfiles/dmat_help.md
inst/helpfiles/gap_help.md
inst/helpfiles/measures_help.md
inst/helpfiles/overview_help.md
inst/helpfiles/params_help.md
inst/helpfiles/pca_help.md
inst/helpfiles/sidebar_help.md
inst/helpfiles/signif_help.md
inst/helpfiles/table_help.md
inst/www/bootstrap.min.css
inst/www/data/logscaled.csv
inst/www/data/sim_binary.csv
inst/www/data/sim_logscaled.csv
inst/www/data/sim_normal.csv
inst/www/data/sim_normal_missing.csv
inst/www/data/sim_normalannot.csv
inst/www/github.png
man/annotate_clusters.Rd
man/bin_df.Rd
man/cluster_boxplots.Rd
man/cluster_colors.Rd
man/cluster_heatmaps.Rd
man/compute_clusters.Rd
man/compute_dmat.Rd
man/compute_gapstat.Rd
man/compute_metric.Rd
man/correlation_heatmap.Rd
man/create_annotations.Rd
man/cut_clusters.Rd
man/dmat_projection.Rd
man/facet_boxplot.Rd
man/line_plot.Rd
man/logscaled_df.Rd
man/normal_annotated.Rd
man/normal_df.Rd
man/normal_missing.Rd
man/optimal_score.Rd
man/plot_annotation_dist.Rd
man/plot_cluster_heatmaps.Rd
man/run_app.Rd
tests/testthat.R
tests/testthat/Rplots.pdf
tests/testthat/helper_workflow.R
tests/testthat/test-plot.R
tests/testthat/test-plot_heatmaps.R
tests/testthat/test-utils_clustering.R
tests/testthat/test-utils_data.R
vignettes/.gitignore
vignettes/clusterevaluation.Rmd
vignettes/clusterworkflow.Rmd
vignettes/evaluate.gif
vignettes/iterate.gif
vignettes/load_data.gif
vignettes/review_results.gif
vignettes/view_results.gif
vignettes/visxhclust.Rmd
visxclust.Rproj
