getCounts: getCounts
In rhondabacher/Trendy: Breakpoint analysis of time-course expression data
View source: R/helperFunctions.R
getCounts R Documentation
getCounts
Description
Convenient helper function to extract the normalized
expression matrix from the SummarizedExperiment
Usage
getCounts(DATA)
Arguments
DATA
An object of class SummarizedExperiment that contains
expression data and metadata
Value
A matrix which contains the expression data
where genes/features are in rows and samples are in columns
Examples
m1 <- matrix(c(c(rnorm(50,5,1),sort(rnorm(50, 15, 5))), rnorm(100, 50,10)), 2, 100, TRUE)
ExampleData <-
SummarizedExperiment::SummarizedExperiment(assays=list("Counts"=m1))
myData <- getCounts(ExampleData)
rhondabacher/Trendy documentation built on Oct. 26, 2023, 3:46 a.m.
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View source: R/helperFunctions.R
| getCounts | R Documentation |
getCounts
Description
Convenient helper function to extract the normalized expression matrix from the SummarizedExperiment
Usage
getCounts(DATA)
Arguments
DATA |
An object of class |
Value
A matrix which contains the expression data
where genes/features are in rows and samples are in columns
Examples
m1 <- matrix(c(c(rnorm(50,5,1),sort(rnorm(50, 15, 5))), rnorm(100, 50,10)), 2, 100, TRUE)
ExampleData <-
SummarizedExperiment::SummarizedExperiment(assays=list("Counts"=m1))
myData <- getCounts(ExampleData)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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