API for ribosomeprofiling/ribor
An R Interface for Ribo Files
| Global functions | |
|---|---|
| Ribo | Man page Source code |
| Ribo-class | Man page |
| alias_hash | Man page |
| alias_hash,Ribo-method | Man page |
| change_reference_names | Source code |
| check_alias | Source code |
| check_coverage | Source code |
| check_experiments | Source code |
| check_ld_input | Source code |
| check_lengths | Source code |
| check_metagene_input | Source code |
| check_plot_metagene | Source code |
| check_plot_rc_input | Source code |
| check_rc_input | Source code |
| check_regions | Source code |
| check_rnaseq | Source code |
| compute_boundaries | Source code |
| compute_original_boundaries | Source code |
| experiment_info | Man page |
| experiment_info,Ribo-method | Man page |
| experiments | Man page |
| experiments,Ribo-method | Man page |
| fill_coverage | Source code |
| format_experiment_info | Source code |
| format_file_info | Source code |
| format_version | Man page |
| format_version,Ribo-method | Man page |
| generate_matrix | Source code |
| get_attributes | Source code |
| get_content_info | Source code |
| get_coverage | Man page Source code |
| get_dataset_path | Source code |
| get_experiments | Man page Source code |
| get_info | Man page Source code |
| get_internal_region_coordinates | Man page Source code |
| get_internal_region_lengths | Man page Source code |
| get_length_distribution | Man page Source code |
| get_metadata | Man page Source code |
| get_metagene | Man page Source code |
| get_metagene_path | Source code |
| get_original_region_coordinates | Man page Source code |
| get_original_region_lengths | Man page Source code |
| get_rc_path | Source code |
| get_read_lengths | Source code |
| get_reference_lengths | Source code |
| get_reference_names | Man page Source code |
| get_region_coordinates | Man page Source code |
| get_region_counts | Man page Source code |
| get_region_lengths | Man page Source code |
| get_rnaseq | Man page Source code |
| get_tidy_metagene | Man page Source code |
| has_metadata | Man page |
| has_metadata,Ribo-method | Man page |
| help_make_dataframe | Source code |
| initialize_coverage | Source code |
| initialize_matrix_coverage | Source code |
| initialize_transcript_info | Source code |
| left_span | Man page |
| left_span,Ribo-method | Man page |
| length_max | Man page |
| length_max,Ribo-method | Man page |
| length_min | Man page |
| length_min,Ribo-method | Man page |
| length_offset | Man page |
| length_offset,Ribo-method | Man page |
| make_dataframe | Source code |
| metagene_radius | Man page |
| metagene_radius,Ribo-method | Man page |
| original_hash | Man page |
| original_hash,Ribo-method | Man page |
| path | Man page |
| path,Ribo-method | Man page |
| plot_length_distribution | Man page Source code |
| plot_metagene | Man page Source code |
| plot_region_counts | Man page Source code |
| prepare_DataFrame | Source code |
| print_metadata | Source code |
| reference | Man page |
| reference,Ribo-method | Man page |
| rename_default | Man page Source code |
| rename_transcripts | Man page Source code |
| retrieve_transcript_info | Source code |
| ribor | Man page |
| right_span | Man page |
| right_span,Ribo-method | Man page |
| set_aliases | Man page Source code |
| show,Ribo-method | Man page |
| strip_rlefactor | Source code |
| sum_lengths | Source code |
| transcript_info | Man page |
| transcript_info,Ribo-method | Man page |
