Man pages for ribosomeprofiling/ribor
An R Interface for Ribo Files
| get_coverage | Retrieves the coverage data for a given transcript |
| get_experiments | Provides a list of experiments from a .ribo file |
| get_info | Get information about the .ribo file |
| get_internal_region_coordinates | Retrieves the region stop and start coordinates |
| get_internal_region_lengths | Returns the overall length of each region with UTR Junctions |
| get_length_distribution | Retrieves the length distribution of a given region |
| get_metadata | Retrieves the metadata of an experiment |
| get_metagene | Retrieves the metagene data from a .ribo file |
| get_original_region_coordinates | Retrieves the region stop and start coordinates |
| get_original_region_lengths | Returns the overall length of each region |
| get_reference_names | Retrieves a list of reference names |
| get_region_coordinates | Retrieves the region stop and start coordinates |
| get_region_counts | Retrieves the region counts from a .ribo file |
| get_region_lengths | Returns the overall length of each region with UTR Junctions |
| get_rnaseq | Information on the RNA-Seq data of the experiments, if any |
| get_tidy_metagene | Retrieves the metagene data in a tidy format |
| plot_length_distribution | Plots the length distribution |
| plot_metagene | Plots the metagene coverage data |
| plot_region_counts | Plots the region counts of UTR5, CDS, and UTR3 |
| rename_default | Rename function for appris transcriptome naming convention |
| rename_transcripts | Renames the transcripts |
| ribo-class | Ribo Class |
| ribor | ribor: A package for reading .ribo files |
| set_aliases | Set the aliases of a ribo object |
