README.md

In ricebrian/MaizeNAM: Maize Nested Association Mapping Dataset

Install from GitHub with

devtools::install_github('ricebrian/MaizeNAM')

Get the complete SNP data

require(MaizeNAM)

DownloadData()

Get genotypic data + phenotypic value for any given trait

GetData = BLUP(trait="PlantHeight",family="all",env="all")

Check data

head(GetData$Phen) # Deregressed phenotypic BLUPs

dim(GetData$Gen) # Panel of SNPs segregating in all familier

Analysis

# The data above is already formatted to run genomic analysis on multiple packages (NAM,bWGR,mas,BGLR,rrBLUP,glmnet)

ricebrian/MaizeNAM documentation built on Dec. 10, 2022, 7:32 a.m.