create_one_div_x_distr: Create a 1/x distribution

In richelbilderbeek/beautier: 'BEAUti' from R

Create a 1/x distribution

Description

Create a 1/x distribution

Usage

create_one_div_x_distr(id = NA, value = NA, lower = NA, upper = NA)

Arguments

id	the distribution's ID
value	the initial value for the MCMC
lower	the lower bound, the lowest possible value
upper	an upper limit of the uniform distribution. If the upper limits needs to be infinity, set upper to Inf.

Value

a 1/x distribution

Author(s)

Richèl J.C. Bilderbeek

See Also

the function create_distr shows an overview of all supported distributions

Examples

if (is_on_ci()) {

  one_div_x_distr <- create_one_div_x_distr()

  beast2_input_file <- get_beautier_tempfilename()
  create_beast2_input_file(
    input_filename = get_fasta_filename(),
    beast2_input_file,
    tree_prior = create_yule_tree_prior(
      birth_rate_distr = one_div_x_distr
    )
  )
  file.remove(beast2_input_file)

  remove_beautier_folder()
}

richelbilderbeek/beautier documentation built on April 4, 2024, 12:33 p.m.