test_that("minimal use, v2.4", {
inference_model <- create_inference_model()
inference_model <- init_inference_model(
input_filename = get_beautier_path("test_output_0.fas"),
inference_model = inference_model
)
expect_silent(
create_beast2_input_operators(
inference_model = inference_model
)
)
})
test_that("minimal use, v2.6", {
inference_model <- create_inference_model(
beauti_options = create_beauti_options_v2_6()
)
inference_model <- init_inference_model(
input_filename = get_beautier_path("test_output_0.fas"),
inference_model = inference_model
)
expect_silent(
create_beast2_input_operators(
inference_model = inference_model
)
)
})
test_that("detailed use, v2.4", {
expected <- unindent(
stringr::str_subset(
readr::read_lines(get_beautier_path("2_4.xml")),
"<operator id="
)
)
inference_model <- create_inference_model()
inference_model <- init_inference_model(
input_filename = get_beautier_path("test_output_0.fas"),
inference_model = inference_model
)
created <- create_beast2_input_operators(
inference_model = inference_model
)
expect_true(are_equivalent_xml_lines(created, expected))
})
test_that("detailed use, v2.6", {
expected <- unindent(
stringr::str_subset(
readr::read_lines(get_beautier_path("2_6_2.xml")),
"<operator id="
)
)
inference_model <- create_inference_model()
inference_model <- init_inference_model(
input_filename = get_beautier_path("test_output_0.fas"),
inference_model = inference_model
)
created <- create_beast2_input_operators(
inference_model = inference_model
)
# Creates temporary files in beautier folder
compare_lines(
lines = created,
expected = expected
)
expect_true(are_equivalent_xml_lines(created, expected))
remove_beautier_folder()
check_empty_beautier_folder()
})
test_that("detailed use, v2.4, RLN", {
expected <- unindent(
stringr::str_subset(
readr::read_lines(get_beautier_path("rln_2_4.xml")),
"<operator id="
)
)
inference_model <- create_inference_model(
clock_model = create_rln_clock_model(),
beauti_options = create_beauti_options_v2_4()
)
inference_model <- init_inference_model(
input_filename = get_beautier_path("test_output_0.fas"),
inference_model = inference_model
)
created <- create_beast2_input_operators(
inference_model = inference_model
)
expect_true(are_equivalent_xml_lines(created, expected))
})
test_that("detailed use, v2.6, RLN", {
expected <- unindent(
stringr::str_subset(
readr::read_lines(get_beautier_path("rln_2_6.xml")),
"<operator id="
)
)
inference_model <- create_inference_model(
clock_model = create_rln_clock_model(),
beauti_options = create_beauti_options_v2_6()
)
inference_model <- init_inference_model(
input_filename = get_beautier_path("test_output_0.fas"),
inference_model = inference_model
)
created <- create_beast2_input_operators(
inference_model = inference_model
)
expect_true(are_equivalent_xml_lines(created, expected))
})
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