create_gcae_input_filenames: Create a 'gcae_input_filenames'

In richelbilderbeek/gcaer: Interface to GCAE

Create a gcae_input_filenames

Description

Create a gcae_input_filenames, as can be checked by check_gcae_input_filenames

Usage

create_gcae_input_filenames(
  bed_filename,
  bim_filename,
  fam_filename,
  phe_filename,
  labels_filename
)

Arguments

bed_filename	name of a PLINK genotypes (.bed) file, as can be read using read_plink_bed_file
bim_filename	name of a PLINK .bim file as can be read using read_plink_bim_file
fam_filename	name of a PLINK .fam file as can be read using read_plink_fam_file
phe_filename	name of a PLINK phenotype (.phe) file as can be read using read_plink_phe_file
labels_filename	path to a .csv file containing super- and -population labels, as can be read by read_labels_file

Value

a gcae_input_filenames, as can be checked by check_gcae_input_filenames

Author(s)

Richèl J.C. Bilderbeek

See Also

Use get_gcae_input_filenames to obtain the gcae_input_filenames from a gcae_setup (see check_gcae_setup) and gcae_options (see check_gcae_options).

Use create_test_gcae_input_filenames to create a gcae_input_filenames to be used in testing.

Examples

create_gcae_input_filenames(
  bed_filename = get_gcaer_filename("gcae_input_files_1.bed"),
  bim_filename = get_gcaer_filename("gcae_input_files_1.bim"),
  fam_filename = get_gcaer_filename("gcae_input_files_1.fam"),
  phe_filename = get_gcaer_filename("gcae_input_files_1.phe"),
  labels_filename = get_gcaer_filename("gcae_input_files_1_labels.csv")
)

richelbilderbeek/gcaer documentation built on March 25, 2024, 3:08 p.m.