install_gcae: Install a specific version of GCAE

In richelbilderbeek/gcaer: Interface to GCAE

Install a specific version of GCAE

Description

Install a specific version of GCAE.

Usage

install_gcae(
  gcae_options = create_gcae_options(),
  github_repo_url = get_default_github_repo_url(),
  github_repo_branch_name = get_default_github_repo_branch_name(),
  verbose = FALSE
)

Arguments

gcae_options	options to run GCAE, as created by create_gcae_options
github_repo_url	URL of the GitHub repository, e.g. ⁠https://github.com/kausmees/GenoCAE⁠ or ⁠https://github.com/cnettel/GenoCAE⁠ or ⁠https://github.com/richelbilderbeek/GenoCAE⁠. Use get_default_github_repo_url for the default value
github_repo_branch_name	name of the git branch, e.g master or Pheno. Use get_default_github_repo_branch_name for the default value
verbose	the verbosity of a function. Set to TRUE for more output. Use check_verbose to detect if this argument is valid.

Details

1. Clone the GCAE repo, see clone_gcae_repo

2. Install the needed Python packages, see install_gcae_requirements

3. Fix the GCAE script, see fix_gcae_script

Value

Nothing

Author(s)

Richèl J.C. Bilderbeek

richelbilderbeek/gcaer documentation built on March 25, 2024, 3:08 p.m.