get_ic50_threshold: Look up the IC50 value of a certain quantile
In richelbilderbeek/mhcnpreds: MHCnuggets Predictions
View source: R/get_ic50_threshold.R
Description
Look up the IC50 value of a certain quantile.
Such a value can serve as a threshold:
for example, to get the IC50 value from below which the
peptides bind strongest.
Usage
1
get_ic50_threshold(peptide_length = 9, mhc_haplotype, percentile = 0.02)
Arguments
peptide_length
length of the peptide in amino acids
mhc_haplotype
haplotype of either HMC-I or MHC-II.
in MHCnuggetsr format.
Use mhcnuggetsr::get_mhc_1_haplotypes
to get a list of all MHC-I haplotypes.
Use mhcnuggetsr::get_mhc_2_haplotypes
to get a list of all MHC-II haplotypes.
percentile
the IC50 percentile. The IC50 that separates the top
percentile from the worse binders
richelbilderbeek/mhcnpreds documentation built on Nov. 25, 2020, 3:59 a.m.
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View source: R/get_ic50_threshold.R
Description
Look up the IC50 value of a certain quantile. Such a value can serve as a threshold: for example, to get the IC50 value from below which the peptides bind strongest.
Usage
1 | get_ic50_threshold(peptide_length = 9, mhc_haplotype, percentile = 0.02)
|
Arguments
peptide_length |
length of the peptide in amino acids |
mhc_haplotype |
haplotype of either HMC-I or MHC-II.
in MHCnuggetsr format.
Use |
percentile |
the IC50 percentile. The IC50 that separates the top
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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