Man pages for richelbilderbeek/peregrine
Work With The Groninger Peregrine Computer Cluster
| are_pff_experiments | Determine if all experiments have Peregrine friendly... |
| check_pff_alignment_params | Check if the alignment parameter have PFF |
| check_pff_beast2_options | Check if the BEAST2 options are PFF |
| check_pff_experiment | Check if an experiment has PFF |
| check_pff_experiments | Check if all experiments have PFF |
| check_pff_inference_model | Check if the inference model is Peregrine friendly |
| check_pff_mcmc | Check if the mcmc is PFF |
| check_pff_pir_params | Check if the 'pir_params' are valid and Peregrine-friendly. |
| check_pff_twinning_params | Check if the twinning parameters have PFF |
| count_jobs | Count the number of jobs |
| count_regular_jobs | Count the number of 'regular' jobs |
| count_vulture_jobs | Count the number of 'vulture' jobs |
| create_all_pff_experiments | Create all experiments as done by create_all_experiments with... |
| create_pff_beast2_options | Create BEAST2 options that has Peregrine friendly filenames |
| create_pff_mcmc | Create mcmc that has Peregrine friendly filenames |
| create_pff_pir_params | Create a 'pir_params' with PFFs |
| create_test_pff_gen_experiment | Creates a Peregrine-friendly generative experiment for... |
| default_params_doc | This function does nothing. It is intended to inherit is... |
| get_pff_tempdir | Get a Peregrine-friendly temporary directory |
| get_pff_tempfile | Get a Peregrine-friendly temporary filename |
| is_on_peregrine | Is this code running on Peregrine? |
| is_on_peregrine_login_node | Is this code run on the Peregrine login node? |
| is_on_peregrine_worker_node | Is this code run on a Peregrine worker node? |
| is_pff | Is the filename a Peregrine-friendly filename? |
| is_pff_beast2_options | Are the BEAST2 options PFF? |
| is_pff_experiment | Determine if an experiment has Peregrine friendly filenames |
| time_strs_to_n_secs | Convert each time string to the number of seconds |
| time_str_to_n_sec | Convert time from HH:MM:SS to the number of seconds |
| to_pff | Convert a filename or folder to it Peregrine-friendly... |
| to_pff_alignment_params | Convert all the alignment_params with Peregrine-unfriendly... |
| to_pff_beast2_options | Converts a BEAST2 options to have PFF. If all filenames are... |
| to_pff_experiment | Convert an experiment to one with PFF. |
| to_pff_experiments | Convert all the experiments with Peregrine-unfriendly... |
| to_pff_mcmc | Converts a mcmc to have PFF. If all filenames are... |
| to_pff_pir_params | Convert a 'pir_params' to a 'pir_params' with Peregrine... |
| to_pff_twinning_params | Convert a 'twinning_params' to one with Peregrine-friendly... |
