create_test_pff_gen_experiment: Creates a Peregrine-friendly generative experiment for...

In richelbilderbeek/peregrine: Work With The Groninger Peregrine Computer Cluster

Creates a Peregrine-friendly generative experiment for testing

Description

Creates a Peregrine-friendly generative experiment for testing

Usage

create_test_pff_gen_experiment(
  mrca_prior = beautier::create_mrca_prior(mrca_distr =
    beautier::create_normal_distr(mean = 15, sigma = 0.001), is_monophyletic = TRUE),
  mcmc = peregrine::create_pff_mcmc(chain_length = 2000, store_every = 1000),
  beast2_options = peregrine::create_pff_beast2_options()
)

Arguments

mrca_prior	an MRCA priors, as created by create_mrca_prior
mcmc	an MCMC, as created by create_mcmc or by create_pff_mcmc for automatic peregrine friendly filenames check
beast2_options	BEAST2 options, as can be created by create_beast2_options

Author(s)

Richèl J.C. Bilderbeek

richelbilderbeek/peregrine documentation built on Jan. 3, 2024, 7:42 p.m.