NEWS.md

In richelbilderbeek/pureseqtmr: Predict Transmembrane Protein Topology

News

Newest versions at top.

pureseqtmr 1.4 (2023-04-06)

NEW FEATURES

• None

MINOR IMPROVEMENTS

• None

BUG FIXES

• None

DEPRECATED AND DEFUNCT

• None

pureseqtmr 1.3 (unreleased)

NEW FEATURES

• Add predict_topologies_from_sequences to predict topologies directly from one or more sequences
• predict_topology works on empty FASTA files
• predict_topology returns topologies in the same order as the sequences, a workaround for https://github.com/PureseqTM/PureseqTM_Package/issues/11
• create_pureseqtm_proteome_file shows PureseqTM error messages
• Add mock_predict_topologies and mock_predict_topologies_from_sequences to mock the prediction of topologies, as can be useful in testing
• Add count_n_tmhs to count the number of TMHs
• load_fasta_file_as_tibble_cpp (which uses C++) is approximately ten thousand times as fast as load_fasta_file_as_tibble_r (which uses R)
• load_fasta_file_as_tibble runs C++ and R version and checks if the results are equal. Will be removed later
• Give error on selenoproteins, garbage sequences and very short proteins
• Add is_valid_protein_sequence and are_valid_protein_sequences

MINOR IMPROVEMENTS

• None

BUG FIXES

• None

DEPRECATED AND DEFUNCT

• None

pureseqtmr 1.2 (2020-07-31)

NEW FEATURES

• First version on CRAN

MINOR IMPROVEMENTS

• Process feedback CRAN, thanks Swetlana Herbrandt

BUG FIXES

• None

DEPRECATED AND DEFUNCT

• None

pureseqtmr 1.1 (2020-06-18)

NEW FEATURES

• None

MINOR IMPROVEMENTS

• Process feedback CRAN, thanks Jelena Saf

BUG FIXES

• None

DEPRECATED AND DEFUNCT

• None

pureseqtmr 1.0 (2020-05-21)

NEW FEATURES

• Initial version

MINOR IMPROVEMENTS

• None

BUG FIXES

• None

DEPRECATED AND DEFUNCT

• None

richelbilderbeek/pureseqtmr documentation built on April 16, 2023, 1:19 p.m.