tmhmm: tmhmm: estimate the topoplogy of membrane proteins

In richelbilderbeek/tmhmm: Interface to TMHMM

tmhmm: estimate the topoplogy of membrane proteins

Description

Each amino acid that is part a membrane protein can be located either in the cytosol, membrane or at the exterior. 'tmhmm' estimate this topology

Author(s)

Richèl J.C. Bilderbeek

Examples

if (is_tmhmm_installed()) {
  fasta_filename <- system.file("extdata", "tmhmm.fasta", package = "tmhmm")
  topology_text <- run_tmhmm(fasta_filename)

  # Show as text
  print(topology_text, sep = "\n")

  # Show as data frame
  print(fasta_text_to_tibble(topology_text))

  # Show as plot
  plot_topology_text(topology_text)
}

richelbilderbeek/tmhmm documentation built on Sept. 3, 2022, 5:14 p.m.