scatterplot_with_fill_and_shape: Plot 2 columns against each other with Fill and Shapes

In richysix/biovisr: Biological Visualisation Functions

Plot 2 columns against each other with Fill and Shapes

Description

scatterplot_with_fill_and_shape Takes a data.frame and creates an x-y scatterplot

Usage

scatterplot_with_fill_and_shape(
  plot_data,
  x_var,
  y_var,
  fill_var,
  fill_palette,
  shape_var = "None",
  shape_palette,
  point_labels = NULL,
  label_seed = NA,
  point_size = 4,
  ...
)

Arguments

plot_data	data.frame - plot data
x_var	character - name of the column to plot on the x axis
y_var	character - name of the column to plot on the y axis
fill_var	character - name of the column to use as the fill aesthetic
fill_palette	character - a named character vectors of colours for the fill aesthetic
shape_var	character - name of the column to use as the shape aesthetic
shape_palette	character - a named character vectors of shapes for the shape aesthetic
point_labels	character - labels for the points. Either a column name from the plot_data or a character vector. Default: NULL - no labels
point_size	numeric - size of points
labels_seed	integer - seed for geom_text_repel

Details

The plot data data.frame should contain the columns for the x, y and fill variables and optionally ones for the shape variable and text labels. The text label column should be named sample_name.

Value

ggplot2 object

Examples

scatterplot_with_fill_and_shape( plot_data, 'PC1', 'PC2', 'Gene', fill_palette,
                             'Genotype', shape_palette, sample_names )

richysix/biovisr documentation built on Feb. 3, 2024, 4:36 a.m.