FilesToDESeqObj: FilesToDESeqObj
In richysix/geneExpr: A Shiny App For Visualising RNA-seq Data
FilesToDESeqObj R Documentation
FilesToDESeqObj
Description
FilesToDESeqObj returns a DESeqDataSet object produced from the supplied sample and count files
Usage
FilesToDESeqObj(sampleFile, countFile, dataType, session)
Arguments
sampleFile
character - name of the sample file
countFile
character - name of the count file
Details
The first column of the sample file must match the sample names in the column names of the count file
The sample file must also have a column labelled "condition" for the DESeq2 design formula.
If the samples file contains a column labelled "sampleName" the samples will be renamed.
Value
a DESeqDataSet object
Examples
FilesToDESeqObj( 'samples.txt', 'all.tsv' )
richysix/geneExpr documentation built on Oct. 7, 2022, 2:18 a.m.
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| FilesToDESeqObj | R Documentation |
FilesToDESeqObj
Description
FilesToDESeqObj returns a DESeqDataSet object produced from the supplied sample and count files
Usage
FilesToDESeqObj(sampleFile, countFile, dataType, session)
Arguments
sampleFile |
character - name of the sample file |
countFile |
character - name of the count file |
Details
The first column of the sample file must match the sample names in the column names of the count file The sample file must also have a column labelled "condition" for the DESeq2 design formula. If the samples file contains a column labelled "sampleName" the samples will be renamed.
Value
a DESeqDataSet object
Examples
FilesToDESeqObj( 'samples.txt', 'all.tsv' )
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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