cluster_matrix: hierarchical cluster matrix by rows or columns (or both)

In richysix/miscr: Collection of Miscellaneous Functions

hierarchical cluster matrix by rows or columns (or both)

Description

cluster_matrix hierarchically clusters the supplied matrix by row or column or both

Usage

cluster_matrix(
  mat,
  by_row = TRUE,
  by_col = FALSE,
  scale = TRUE,
  dist_method = "pearson",
  ...
)

Arguments

mat	Matrix of counts to cluster
by_row	logical - whether to cluster the rows of the matrix
by_col	logical - whether to cluster the columns of the matrix
scale	logical indicating whether to center and scale the data
dist_method	character method for ceating the distance matrix
...	other arguments passed to hclust

Value

reordered matrix based on clustering

Examples

set.seed(1452)
cluster_matrix( matrix(rnorm(100), ncol = 5) )

cluster_matrix( matrix(rnorm(100), ncol = 5), by_row = FALSE, by_col = TRUE )

richysix/miscr documentation built on March 24, 2023, 5:24 a.m.