| applyflowchart | Annotate and label each reader mark based on a decision tree |
| binCI | Combine three numbers into a formatted text string |
| demoanon | Example anonomyization file |
| demodata | Example reader workstation file |
| derivedetections | Tabulate reader detections. |
| derivelesionsens | Calculate sensitivity for each lesion |
| derivesensspec | Calculate patient-level sensitivity and specificity. |
| essentiallesions | Determine essential lesions. |
| figuresave | Save package figure to PNG. |
| getMaxConfidence | Internal function to get maximum confidence score. |
| makeJAFROCfile | Produce JAFROC analysis storage file. |
| mrmctools | 'mrmctools' package |
| plotDeltaFOM | Plot Delta FOM from Reference Modality. |
| plotFOM | Plot Figure of Merit. |
| plotPTC | Plot rating histogram. |
| plotPTCbins | Plot confidence scores by bin |
| plotthreshold_modality | Plot reader sensitivity for a particular modality. |
| plotthreshold_reader | Plot reader sensitivity for a particular reader. |
| prepareestimates | Preprocess raw JAFROC results. |
| readworkstationfile | Read and normalize reader workstation file. |
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