plot_sims: Show the SIM traces

In ricoderks/eisaCIM: Single Quadrupole Multiple Fragment Ion Monitoring Quantitative Mass Spectrometry

Description

Plot all SIM trace, including optional line to show where the compound elutes.

Usage

plot_sims(
  sim_data,
  rt_line = NULL,
  title = NULL,
  subtitle = NULL,
  peak_data = NULL
)

Arguments

sim_data	Data frame containing all the SIMs. Needs three columns: rt = retention time (x), intensity = intensity (y), sim = factor with the SIM names (used for faceting)
rt_line	A numerical value. If not NULL a dashed line is shown at this position.
title	Title of the plot (character).
subtitle	Subtitle of the plot (character).
peak_data	data frame containing all peak data. Output from find_peaks().

Value

A ggplot2 showing all the SIM traces.

Author(s)

Rico Derks

ricoderks/eisaCIM documentation built on Dec. 22, 2021, 4:09 p.m.